Polaribacter sp. BM10: BXQ17_10470
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Entry
BXQ17_10470 CDS
T04746
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pola
Polaribacter sp. BM10
Pathway
pola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BXQ17_10470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pola03019
]
BXQ17_10470
Enzymes [BR:
pola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BXQ17_10470
Messenger RNA biogenesis [BR:
pola03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BXQ17_10470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Fe-ADH
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AQS94463
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All DBs
Position
2386007..2387341
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AA seq
444 aa
AA seq
DB search
MTFSDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVL
QYLSDTKHPKYRPLRALVLTPTKELAAQVHDNVKEYSKYVNIKSAVVFGGVNAKPQIATL
RRGVDILVATPGRLLDLHDQKAVSFKRIDVLILDEADRMLDMGFVRDINKLISFMPAKRQ
NLLFSATFSKEIKKLASGILENPVSVETAPQNSTAKKVTHKVFKVDKKRKTEFTIKLIKD
NNWNQVLIFTRTKHGANKLTQKLIQSKITAAAIHGNKSQGARTKALKNFKENTIKVLVAT
DIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEETEYQNEIEK
LLNEKLKSTVVEGFEPTDTAPPKRAATQSKSSFGKKKKQRPSNGNPGGSSDQKKPKRKPH
FKGKKPAGATSGRGRTGAPKKKRF
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgacattttcagatttaggtttatctccagcgttggtaaaggcagttgaagaaaaagga
tataccaaaccatctccaatacaagaaaaagcgattccgcatatattagaaggcaaagat
attttagcttccgcacaaacaggaaccggtaaaacagcaggttttacattgcctgtttta
caatatttatcagacacaaaacacccaaaatatagaccattaagagccttagtgcttaca
ccaacaaaagaattagctgcacaagttcacgacaatgtaaaagagtacagcaagtatgtt
aatataaaatctgcagtggtttttggtggtgtaaatgcaaaacctcaaatagcaacttta
agaagaggtgtagatattttagtagcaacacctggtagattgttagatttacatgaccaa
aaagcggtgtcgtttaaaagaattgatgttctaattttagatgaagcagatagaatgtta
gacatgggttttgttagagacattaacaaacttattagttttatgcccgctaagagacaa
aacttattgttttctgctacattttctaaagagattaaaaagttagcatcgggtatttta
gaaaatcctgtttctgtagaaacagcaccacaaaattctaccgctaaaaaagtaactcac
aaggtttttaaagttgataaaaaaagaaaaacagaatttacaattaagttgataaaagac
aataattggaaccaagttttaatttttacaagaacaaagcatggtgcaaataagttaacg
caaaagttaattcaatctaaaattactgcagcagcaatacatggtaataaaagtcaaggc
gcaagaacaaaagctttaaaaaactttaaagaaaacaccataaaagttttagttgcaaca
gatattgctgcaagaggattagacattccgttactaccacacgttataaatttcgaacta
ccaaatgtacccgaagattatgtacatagaattggtagaactggtagagctggtgctgcc
ggagaagcaatttctttggtttgtagcgaagaaacagaataccaaaatgaaattgaaaaa
cttttaaacgaaaaattaaaatctacggttgtagaaggttttgaaccaacagatactgca
ccgcctaaaagagctgcaacacaaagtaaaagttcttttggtaaaaagaaaaaacaaaga
ccttctaatggaaaccctggaggttcttctgatcaaaaaaaaccaaaaaggaaacctcat
tttaaaggcaagaaacctgcaggcgcaacttctggaagaggtagaactggtgcaccaaaa
aaaaaacgattttag
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