Polynucleobacter sp. HIN6: PHIN6_08380
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Entry
PHIN6_08380 CDS
T11784
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
polh Polynucleobacter sp. HIN6
Pathway
polh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
polh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHIN6_08380 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
polh03021
]
PHIN6_08380 (rho)
03019 Messenger RNA biogenesis [BR:
polh03019
]
PHIN6_08380 (rho)
Transcription machinery [BR:
polh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PHIN6_08380 (rho)
Messenger RNA biogenesis [BR:
polh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PHIN6_08380 (rho)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BEI35320
LinkDB
All DBs
Position
complement(832692..833954)
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AA seq
420 aa
AA seq
DB search
MQLTELKVLHVSQLLEMAASLEIENTQRMRKQELMFAILKKRAKAGEQVFGDGVLEVLPD
GFGFLRSPESSYMASPDDIYISPAQIRRFNLHTGDSIEGEVRTPKEGERYFALVKVDKIN
GMAPEDLKNRIMFENLTPLHPNRNIALERDIKAEENLTGRIIDMISPIGFGQRGLIVASP
KSGKTVMMQHVAHAISQNYPDAILIVLLVDERPEEVTEMQRSVRGEVVASTFDEPAVRHV
QVAEMVIEKAKRLVEMKKDVIILLDSITRLARAYNTVVPSSGKVLSGGVDANALQRPKRF
FGAARNIEEGGSLTILATALIETGSRMDDLIYEEFKGTGNMEVHLERRLAERRVYPAINL
NKSGTRREELLVKPENLQKIWVLRKLLADMDEIEAMNFIVDKLKSTKNNAEFFELMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaattaactgaactcaaagtactccacgtctctcaactcctcgaaatggcagcaagc
ctcgagattgaaaatacccaacggatgcgcaaacaagagctgatgtttgccattctgaag
aagcgggctaaggccggcgaacaagtttttggcgatggcgtcttagaggtattacccgat
ggctttggattcttgcgctcccccgagtcgtcttatatggcgtctcccgatgatatttat
atctcccctgcacagatccgtcgttttaacttacacacgggtgacagtatcgagggtgaa
gtgcgcacccccaaagagggtgagcgttactttgctttggtgaaggtcgacaagattaat
ggcatggcgcctgaggatctcaaaaatcgcatcatgtttgagaacctcacgccgcttcac
cccaatcgcaatatcgccctcgagcgggatatcaaggccgaagagaatctcaccggtcgc
attattgatatgatctcgccgattggttttggtcagcgtggcctgatcgtggcatctccc
aagtctggtaagaccgtgatgatgcagcatgtggctcatgcgatctctcaaaattatccc
gatgcgatcttgattgttctcttggtcgatgagcgtcctgaggaagtgactgagatgcag
cgctccgtccgcggtgaagtagttgcttccacctttgatgagccagccgttcgtcacgtc
caggttgctgaaatggtgatcgagaaagccaagcgtctagtggaaatgaaaaaagatgtg
attattttgttagactcgattactcgtctagcccgcgcgtacaacaccgtagtaccctcc
tcaggcaaagtgctctctggtggtgtcgacgccaatgccttgcaacgtcctaagcgtttc
tttggtgccgctcgtaatatcgaagaaggtggatcgctcaccattttggcaaccgcgctg
attgaaaccggtagccgcatggacgatttgatttacgaagagttcaagggcactggcaat
atggaggtccatttagagcgtcgcttagccgagcgccgtgtctaccccgctattaacctc
aataagtcaggcactcgacgcgaggaactcctcgtcaagcccgaaaacctccagaaaatc
tgggtcttacgtaagcttctggccgatatggatgagattgaggctatgaacttcattgtc
gacaagctcaagtccaccaagaataatgccgagttctttgagttgatgcgccgaggcggc
tag
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