Polynucleobacter sp. KF022: PKF022_00430
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Entry
PKF022_00430 CDS
T10441
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
polk Polynucleobacter sp. KF022
Pathway
polk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
polk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PKF022_00430 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
polk03021
]
PKF022_00430 (rpoB)
03400 DNA repair and recombination proteins [BR:
polk03400
]
PKF022_00430 (rpoB)
Enzymes [BR:
polk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PKF022_00430 (rpoB)
Transcription machinery [BR:
polk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PKF022_00430 (rpoB)
DNA repair and recombination proteins [BR:
polk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PKF022_00430 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
BDT74378
LinkDB
All DBs
Position
44621..48721
Genome browser
AA seq
1366 aa
AA seq
DB search
MNYSFTERKRVRKSFAKRVNNHQVPYLIATQLESYAKFLQADKPAMSRLTEGLQAAFTSA
FPIVSNNGYARMEYVSYQLSQPPFDVKECQQRGYTYHSALRAKVRLIIYDREAPTKVKEV
KESEVYMGEIPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNNEQILANFFNFDHFSLTANGG
SMEFVPERLRGQLASFDVLDKNGVVVIQKDKRINAKHIRELEAAKTKTIAVPDDYLIGRV
VARNIVDPDSGEILAYANDEITEELLATLRDAGIKQLETIYTNDLDSGAYISQTLRTDET
ADQMAARIAIYRMMRPGEPPTEDAVEALFQRLFYSEDTYDLSRVGRMKVNSRLNRPEMEG
PMVLSNEDILDTIKSLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK
ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRISALGPG
GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEHGFLETPYRKVAN
SKVSDEVVYLSAIEEAKYVIAQANATIDKSGKLADELVSARQAGETMMVSPERIDFIDVA
PSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGLERIVAVDSGTVV
LAARGGIVDYVDANRVVIRVNDDETAAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVGDR
VARGDVVADGASTDLGELALGQNMTVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEEL
SVVARDTKLGSEEITRDISNLAESQLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETTLT
PEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIERDARAQSIIQEELQRY
RLDLNDQLRIVEGDAFMRLEKLLIGKVANGGPQKLAKGTKIDKEYLAGLDKYHWFDVRPA
DDEVASQVEAIKSSIEAKRKQFDEAFEEKRTKLTQGDDLQPGVTKMVKVYLAVKRRLQPG
DKMAGRHGNKGVVSKIAPAEDMPFMADGRPVDIVLNPLGVPSRMNVGQILETHLGWAAQG
IGKRIDEMVRQQAKQAELRKFLKQLYNETGRIEDIDNFTDEQITVLAENLRQGLPFATPV
FDGATEAEIGRMLELAYPEEVATSLKMTPSRQQMILCDGRTGDQFERPVTVGVMHVLKLH
HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSD
DVAGRTKVYENIVKGEHTIDAGMPESFNVLVKEIRSLGIDIDMERN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaactatagcttcaccgaacgcaagcgagtccgtaaaagctttgctaagcgagtaaac
aaccaccaggttccgtacctgatcgcaacgcagctggaatcctacgctaaatttttacag
gctgataagccggcaatgtctcgtcttactgagggacttcaagctgcctttacatcagca
ttcccaattgtgtctaacaacggctatgcacgtatggaatacgtgtcttaccagttatca
cagccaccatttgacgttaaagaatgtcaacaacgtggctacacataccactctgcctta
cgcgcaaaagttcgcttgattatttatgatcgcgaagcgcctactaaggttaaagaggta
aaagagagcgaagtctacatgggtgaaattccactcatgacagaaaacggctcttttgta
atcaacggtactgagcgcgtgatcgtttctcagttgcaccgttccccaggcgtgttcttt
gagcacgataagggaaagacacatagctcaggtaagttgctgttctcagcgcgcatcatt
ccttaccgtggttcatggctcgatttcgagtttgatccaaaagatattctttatttccgc
gttgaccgtcgtcgtaagatgcctgtcactattttgctcaaagcaattggcttaaacaac
gaacagattcttgctaacttctttaactttgaccatttctcattgactgctaatggtggt
tcaatggaatttgtgccagagcgtttgcgtggtcagttagccagctttgatgtgctcgac
aagaatggcgttgtagtcattcaaaaagacaagcgtatcaatgcaaagcatatccgcgaa
cttgaagctgcaaaaacaaaaacaatcgctgtaccagatgactatttaattggtcgtgta
gttgcacgcaatattgttgatccagactccggtgaaatcttggcttacgctaatgatgaa
attactgaagagttgttggcgacattgcgcgatgcaggtatcaagcagttagaaaccatc
tacaccaacgatttagattctggtgcgtacatttcacagacattgcgtactgacgaaact
gcagatcaaatggctgctcgtatcgccatctaccgcatgatgcgtcctggcgagcctcca
acagaagatgctgttgaagccttgttccagcgcttgttctatagcgaagatacctacgac
ttgtcacgcgttggccgtatgaaggtcaacagccgcttgaaccgtccagaaatggaaggt
ccaatggttctgtcaaacgaagatattctcgacaccattaagtccctagtagatttgcgt
aacggcaaaggcgaagtagacgatatcgaccacttaggtaatcgtcgtgtacgttgcgtt
ggcgaattggcagaaaaccaattccgtgctggtttgtcacgtgttgagcgtgcggttaaa
gagcgtctcggccaagccgaaacagaaaacctcatgccgcatgacttgattaacagcaag
ccaatctcttctgctattcgtgagttcttcggctcttcacagttgtcccagtttatggac
caaaccaacccactctcagagatcacgcacaagcgtcgtatttctgcattgggacctggt
ggtttgacccgcgagcgcgcaggcttcgaagtgcgcgacgtgcatccaacccactatgga
cgtgtttgcccaatcgaaactccagaaggaccaaacattggtttgatcaactcactcgcg
ttatttgcgcgtttgaatgagcatggtttccttgagactccataccgtaaagttgctaac
agcaaagtaagcgacgaagtggtttacctctctgcgattgaagaagcgaagtatgtgatt
gctcaggcaaatgcaactatcgacaagagcggtaagttggctgacgagctggtttcagcc
cgtcaagctggtgaaaccatgatggttagcccagagcgcattgatttcatcgacgttgct
cctagccagatcgtttctgctgctgcctcactcgttccattcttagagcatgatgatgcg
aaccgtgcgttgatgggtgcgaacatgcagcgtcaagcggttccttgcttgcgtccagat
aagccattggttggcacaggtttagagcgtattgttgcggttgactccggcactgtcgta
ttggcagcgcgtggcggtattgttgattacgttgacgcgaatcgtgttgtgattcgtgtg
aatgatgatgaaactgcagctggtgaagttggtgtggatatttataacctcatcaagtac
acccgttcaaaccaaaataccaacattaatcaacgtccaatcgtgaaggttggcgatcgt
gtagcccgcggcgacgtagttgctgacggtgcatctaccgatttaggtgagttggctttg
ggtcaaaacatgactgtggcatttatgccatggaacggttacaacttcgaagattcaatc
ttgatctctgagaaagttgttgctgacgaccgttacacctctattcacattgaagagttg
tcagtggttgcgcgtgataccaagcttggttcagaagaaattactcgcgatatctccaac
ttggctgagtcacaactctcccgcttggatgagagcggtattgtctacattggtgctgaa
gttgaagctggcgacgtattggttggtaaggtaactccaaagggcgagacaactctcacc
cctgaagagaagctcctccgtgcgatcttcggtgaaaaagcatctgacgtaaaagatacc
tctttgcgcgttccatcaggaatgatcggtactgttatcgatgttcaagtcttcacccgt
gaaggtattgagcgcgatgcccgtgcacagtcaatcattcaagaagaattgcaacgctat
cgtttggatttgaacgaccagttgcgtattgttgaaggcgatgccttcatgcgtttagaa
aaactgttgattggcaaagttgccaatggcggtcctcagaaattagctaaaggcactaag
atcgacaaggaataccttgctggcttggataaataccattggtttgatgttcgtccagca
gatgatgaggttgcctcacaagttgaagcgattaaatcttctatcgaagcgaaacgcaaa
cagtttgatgaagcctttgaagagaagcgcaccaagcttacccagggcgatgatttgcaa
cctggcgtaacgaagatggttaaggtgtacttggctgttaagcgtcgcttacagcctggt
gacaagatggccggtcgtcacggtaacaaaggtgtggtttctaaaatcgctccagctgaa
gacatgccatttatggctgacggacgccctgttgacatcgtcttgaacccattgggtgtt
ccttcccgtatgaacgttggtcagatcttggaaacccacttaggttgggctgctcaaggt
attggtaagcgtatcgacgagatggttcgtcaacaagctaaacaagctgaactccgtaag
ttcctcaaacagctttacaacgaaacaggccgtattgaagacatcgacaacttcactgac
gagcaaatcacagtattggctgagaatctccgccaaggcttgccatttgcaactccagtg
tttgacggtgctacagaagcagaaatcggacgtatgctcgagttggcttatccagaagaa
gtagcaacttctttgaagatgacgccttcacgtcagcaaatgattttgtgcgacggccgt
actggcgatcagttcgagcgtccagtaactgttggcgtaatgcacgtcttgaaactccac
catttggtcgatgacaagatgcatgctcgttcaaccggaccttactctttagtaacgcaa
cagccattgggcggtaaagctcagttcggtggtcagcgctttggtgagatggaagtctgg
gccctcgaagcatacggtgcttcatatgtcttgcaggaaatgctgacagtgaagtccgat
gacgtcgcaggccgtaccaaagtttacgaaaacatcgtcaagggcgagcacacgattgat
gctggcatgcccgaatccttcaacgtgctggtaaaagaaatccgttcgttgggtattgac
attgacatggagcgcaactga
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