Polynucleobacter sp. KF022: PKF022_06700
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Entry
PKF022_06700 CDS
T10441
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
polk Polynucleobacter sp. KF022
Pathway
polk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
polk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PKF022_06700 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
polk03019
]
PKF022_06700 (rhlE-2)
Enzymes [BR:
polk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PKF022_06700 (rhlE-2)
Messenger RNA biogenesis [BR:
polk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PKF022_06700 (rhlE-2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
EB1
AAA_22
UvrD-helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BDT75005
LinkDB
All DBs
Position
complement(643894..645174)
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AA seq
426 aa
AA seq
DB search
MLFTDLGLSEPILRAIAEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL
QRLTSAKATSGKRLLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKA
IAGGLDILVATPGRLLDLMSQNCVSLKDIEILVLDEADRMLDMGFLRDIKKILAALPKQR
QNLLFSATFSTEIKALADGLLNAPELIEVARSNSTNEAIAQLIHPVDRTKKHPLLAHLIK
SNDWQQVLVFTRTKHGANKLVTQLEKDGITSMAIHGNKSQSARTKALADFKAGKLTALVA
TDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLRDIE
KLIKQKLPQEVIAGFEPDPNAVAQPIQLRSQQHQQSRKPRPAGAGGAPAKKTPAKRGSPP
KRSFNR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgttatttacagatctcggtttatcagaacccattcttcgcgctatcgctgaagaaggc
tataccagccccacccccattcaagctaaatcaatccctgccgttttaaaaggcggcgat
ctcttggctgcagcacaaactggtacaggtaaaactgctggctttactctaccaattctg
cagcgcttaacttcagccaaagcgacttctggcaagcgcttattgcgcgttttaattctg
acacctacccgcgaattagcagcgcaagtccaagaatctgtcgtgacgtatggtaaatac
actggcttaaagtccacagtcatttttggcggtgttggcgccaatcctcaaattaaagcg
attgctggcggcctcgatattttggttgcgacaccaggacgcttattagatttaatgtca
caaaattgcgtatctcttaaagatattgaaattttagttctcgatgaagcggatcgcatg
ctcgatatgggcttcttgcgcgacatcaagaaaatattggctgcacttccaaagcaacgc
caaaatcttctcttctccgcaaccttctctaccgaaattaaagcgctggctgatggattg
ctaaatgcaccggagttaattgaggtagctcgcagcaatagcaccaacgaggcaatcgcc
caactcatacatccagtagatagaaccaagaagcatccattattagcccatctcattaag
agcaacgactggcagcaagtgctggtctttactcgcaccaagcatggcgctaataaatta
gtgactcagctggagaaagatggcatcactagcatggcgattcatggcaacaagagtcaa
tctgcccgaactaaagcattggctgacttcaaggcgggtaagttaactgccttagttgct
accgatattgcagcacgtggaattgatattgaccaacttccgcacgtagtgaactacgac
ttaccgaatgtctccgaagactatgtacatcgtattgggcgtactggtcgcgctggatcc
aatggcgtagctgtatctttagtgtgtgttgacgagcaccagatgctgagagatattgaa
aaactgattaagcaaaaactaccgcaggaagtgattgcaggttttgagccagatccgaat
gcagtggcgcaacccattcagctgcgtagtcaacaacatcagcaatccagaaagccaaga
cctgctggtgccggtggcgccccagctaaaaagactccggccaagcgcggcagcccacct
aaaagaagctttaaccgttaa
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