Polynucleobacter sp. KF022: PKF022_07220
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Entry
PKF022_07220 CDS
T10441
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
polk Polynucleobacter sp. KF022
Brite
KEGG Orthology (KO) [BR:
polk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
polk03009
]
PKF022_07220 (rlmD)
Enzymes [BR:
polk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PKF022_07220 (rlmD)
Ribosome biogenesis [BR:
polk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PKF022_07220 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_31
RrnaAD
Cons_hypoth95
Methyltransf_15
MTS
PCMT
TRAM
Methyltransf_11
Methyltransf_23
UPF0020
Methyltransf_32
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
BDT75057
LinkDB
All DBs
Position
697750..699177
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AA seq
475 aa
AA seq
DB search
MRRGDKPVNIEVTEPIKVEALDLDAQGIARLAPNEEELAQGQSGKVIFIKGALPTELVTY
TITSDKARFSKAKARDILKPAVFRAEPKCKAFGVCGGCTMQHLDIRAQVAMKQRVLEDDL
QHIAKVKPGEILRPMGGPTWEYRHRARLSAVNRSIKKGTVLIGFHEGKSGYVADMLACEI
LPKHVSDLLPEMRKLVMGLSIVDRMPQIEIAVGEPEDSQSDDPKKSKPVTALVFRNLKPL
TADDEQLLREFANRHQVWIWLQPKGIETVAPFYPVTGKLCYRLPEFEIEMPFKPADFTQV
NHMMNRALVSRAIRLLEVKPTDRVLDLFCGIGNFTLPLARKAKQVLGIEGLASLTTRAKT
NAEHNGLVDKASFMQSDLFEVTPETIASWGKAERWLMDPPREGAMEICKALAELHLQQSD
LLPQRIVYVSCNPKTLARDVEILCHQAGYSLSSAGIINMFPHTSHVESMAVFDRL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagaggggataagccagtcaatattgaggtgactgagccaattaaagtcgaagcc
ttggatctagacgcccaaggcattgcacgcttagcacctaatgaggaagagcttgcccag
ggtcaaagtggcaaagtcatcttcattaagggcgcattgccaacggagttagtgacatac
accatcactagcgacaaagcccgctttagcaaggccaaagctcgagatattctgaagcct
gcagtatttcgggctgagcctaaatgtaaagcctttggtgtttgcggtggctgcacgatg
cagcatttagatatacgtgcacaagttgctatgaagcagcgtgtgctcgaagatgatttg
cagcatattgccaaagtaaagccaggagaaattctgcgcccgatgggtgggcctacttgg
gaataccgtcatcgtgcacgcctcagcgccgttaatcgctctatcaaaaaaggcacggta
ctcattggttttcatgaaggcaagagtggctatgttgctgacatgcttgcgtgtgagatt
ctgcctaagcacgtatccgacttgctgccagagatgcgcaaattggtgatgggcttatct
atcgtcgatcgcatgccgcaaattgaaattgcagttggcgagccagaagattctcaatcg
gatgatcctaaaaagtcaaaaccagttaccgccttggtatttcgtaatctcaagccccta
acggctgacgacgagcaactgctgcgagagtttgccaatcggcatcaggtgtggatatgg
ctccagcccaaaggcattgagacggtggcaccgttttatcccgtgactggcaagctttgc
tatcgattgccagaatttgaaatcgagatgccatttaagccggcagactttacgcaggtt
aatcatatgatgaatcgtgcattagtcagcagggcgattcgcttgcttgaagtaaagcca
acggatcgtgtgctcgatttattttgtgggattggtaatttcacattaccgcttgctaga
aaagcaaaacaagttttaggtatagaaggtttagcaagcttaactactagagccaaaacc
aatgccgaacataacggcctggttgataaagcaagcttcatgcaaagtgatttatttgaa
gtgacgccagaaacgattgcatcctggggaaaagcagagcgctggctaatggatccacca
cgcgaaggcgcgatggagatttgcaaggcgttagccgaattacaccttcagcaaagtgac
ttgcttcctcagcgtattgtgtacgtctcctgtaaccccaaaaccttggcaagagatgtt
gagatcctgtgccatcaagcgggctactctttgagcagtgcagggattattaatatgttc
cctcacacctcacatgtggagtccatggcggtttttgatcggctgtag
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