Polynucleobacter sp. KF022: PKF022_09460
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Entry
PKF022_09460 CDS
T10441
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
polk Polynucleobacter sp. KF022
Pathway
polk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
polk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PKF022_09460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
polk03400
]
PKF022_09460 (mfd)
Enzymes [BR:
polk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PKF022_09460 (mfd)
DNA repair and recombination proteins [BR:
polk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PKF022_09460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AroM
CTE_SPB4
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BDT75281
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All DBs
Position
complement(925073..928618)
Genome browser
AA seq
1181 aa
AA seq
DB search
MSDALNLAPPIPAPRAGQRFTFSGLVGSSDAALIAQTALRYRANFSVMVIFCAQAQEAQR
LLEEIPAFAPQLKTRLLPDWEILPYDHFSPHQDLVSERLATLYELLNGSCDIVLVPVTTA
LQRLGPPNFLSGHTFFFSQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFP
MGSNLPYRLDLFGDEIEQIRAFDPDTQRSLYPVKEIRLLPGHEFPFDDASRTAFRGRWRE
VFEGDPSRCSIYKDANLGIPSAGIESYLPLFFEEQSNVFDYFPRSGDPVWLVSIGDVEET
IKGFWKDTLSRYEFLKHDLDRPILPPKELFLDVDEFFTTSKPYARLAFEKDGSDKSEFYA
VPDIAVHRRDADPISNLRKIVATKKVRVLVCSDSAGRKESIRQLFEESNSVAGSDGKPLY
PLKPEGFEGIADFIKSDSLFGLVTAPLFNGFSWSSENLIVITEAELFTTTARQRRKGKAN
ENADPDMLFKDLSELKIGDPVVHAEHGIGRYQGLVLLNLAPPKEAPIFEEFLHLQYAGQA
TLYVPVQQLEMVTRYAGSDPDSAPLHQLGSGQWDKAKRKAAQQIRDTAAELLGLYAARAI
RKGHAFEFSAHDYAAFAESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEV
ALRASFVAVMGGKQVAILAPTTLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINAALE
AIAKGEADIIIGTHKLLSKETQFANLGLVIVDEEHRFGVRQKDALKALRAEVDILTLTAT
PIPRTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDGVIREAVLREIKRGGQVYFLHN
EVETIQNRKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDV
PTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDPEALSKQAQLRLNAIQAME
ELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTEMLNRAVKSLRSGKEPDLLSP
LQATTDVNLGVPALLPEDYCPDVHERLSLYKRFASTHDFSELMGLREELVDRFGDLPDQA
KSFYETHRLRLEMTGFGIKKIDATPASIQIQFIPNPPIDPMKIIQLIQSSKHIQLNGQDK
LKVLPQKDREFEKLGQRLDAIRQVLRRLNESAVLSPMKTGQ
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcattaaatctagcaccccctatacccgctccccgggctgggcagcgcttt
accttttccgggttagttgggtcgtcagatgccgctttaatagcgcaaaccgcccttcgc
taccgcgccaatttttcggtgatggtgattttttgtgcacaagctcaggaggcccagcgc
ctattagaagaaatccccgcatttgcgccacagctaaaaaccaggcttttgccggattgg
gaaattcttccctacgaccatttttcgccacatcaggatttagtttctgaacggcttgcc
actctttacgaattactcaatggtagctgtgacattgttttggtacctgttaccaccgca
ctccaaagactcggccctcctaattttttatcgggccacacttttttctttagccaaggc
gacaagctcaatgaggctgcattaaagctacaactacaacaagctggttacgatcctgtc
agcgcagtaatgcgtcccggggaatacagtattcgcgggggcttgtttgatttatttccg
atgggatctaatctaccttatcgattggatttatttggcgatgagattgaacaaatccgc
gcatttgaccctgacacacaacgcagcctctatccagtaaaagaaatacgattacttcca
gggcatgagtttccatttgatgatgcctcacgtaccgcattcagaggtcgctggagagag
gtctttgaaggtgatcctagtcgctgctctatttataaagacgccaacctaggtataccc
agcgccggtattgaatcctacttgccgctctttttcgaagagcaatccaatgttttcgac
tatttccctaggtcgggggaccctgtttggctggtcagtattggcgatgtagaggaaacg
attaagggtttttggaaagatacgctatctcgttatgaatttctcaagcacgatttagat
cgccccattcttccacccaaagaattatttttagatgttgatgaatttttcacaacttct
aaaccatatgctcgcctagcatttgaaaaagacggttctgataagagtgagttttatgca
gtccccgatattgcagttcatcgtcgtgacgccgaccctattagcaaccttcggaagatc
gttgccactaaaaaagtacgtgtactggtttgtagtgatagcgccggtcgtaaagaatcg
attcgacagctttttgaagaaagcaattcagttgctggctcagatggcaagcccctttac
ccattaaagccagaaggctttgagggcattgccgattttattaagagcgattcactattt
ggtctggtaaccgcaccactctttaatggattttcttggtcctcagaaaatcttattgtt
attactgaggcggaattatttactactaccgcaagacaacgccgcaaaggaaaggcgaat
gagaatgctgatcctgatatgttgtttaaggatctatccgaactcaagattggtgatccg
gtagtacacgcagagcatggcattgggcgttatcaaggtttagtccttctgaatcttgcg
ccacctaaagaagcgcctatttttgaagagttcttgcatttgcaatatgcaggccaagcc
accttgtatgttccagtacagcaactagaaatggtgactcgttacgccgggtccgatcct
gattcagcgcccttgcatcagctaggctcaggccagtgggataaggccaaaagaaaagct
gctcagcaaattcgcgatacagctgcagagttgctcggtttatatgctgccagagcgata
cgaaaaggacatgcctttgagttttcagcacatgactatgccgcttttgcagaaagcttt
ggctttgaagaaacacctgaccaagccaatgcgattgcagcggtcatcggggatatgact
agtggcaccccaatggatcgcttagtttgtggcgacgttggctttggaaaaacagaagtg
gccctacgcgctagctttgttgccgtgatgggtggaaagcaagtcgctattttggcacca
accaccctacttgctgaacagcacgtcgctacctggaaggatcgctttgcagattggccg
gtacgtattgttgagctctcccgctttaaaactaccaaagagattaatgcagcactcgaa
gcgatcgccaagggtgaggcagacatcattattggaacgcacaaactgctttcaaaagaa
actcagtttgccaatttaggattggtgattgttgatgaggagcatcgctttggtgtgcgc
caaaaagatgctcttaaagcacttcgagctgaggttgatatcttgaccctaacagccaca
cctatcccacgaacattgggtatggcaatggaaggtttaagagaattttccatcatcgct
actgcccctcagaaacgtttagctattaagaccttcgtccgtcgcgaaggtgatggcgtt
attcgtgaagcagtattgcgtgaaatcaaacgtggtggtcaggtttatttcttgcacaat
gaagtggagactattcagaatcgtaaacatgcattacaagaattgattcctgaggcacgt
attagcgtggctcacggccaaatgcatgagcgcgaacttgaatccgtcatgcgtgagttt
gtaactcaacgaaccaatatcttgttatgcaccactatcattgaaacgggcattgatgta
cccacagccaataccatcatcatgcaccgtgcagataagtttggattagcccagctccac
cagttgcgtggtcgtgtgggccgctcccatcaccaagcctatgcctatttactagttccc
gatcctgaggcgctgagtaaacaagcgcagctaagattaaatgctattcaagctatggaa
gagttgggctctgggttctatttggcgatgcacgatttagaaattcgtggcgctggtgaa
gtattgggcgataaacaatctggagagattcatgagattggatttcagctctacaccgag
atgctgaatcgcgccgtgaaatccttgcgcagcggtaaagagccagatcttctctcgcca
ctgcaggcaactaccgatgtgaatctcggtgtacccgccctactaccagaggattactgt
cctgatgtacatgagcgtctctcgctatataaacgatttgcaagtacccacgacttctct
gaattaatgggcttgcgtgaagagttggtagatcgctttggagatctgcccgatcaagcg
aagtccttttatgaaactcaccgcctgcgccttgaaatgactggctttggtattaagaag
attgatgcaacccctgcttccatccagattcaatttataccgaatcctccgattgaccca
atgaaaatcattcaactgattcagtcttcaaagcacattcaactcaatgggcaggataag
ctcaaagtattgccacagaaagaccgagaatttgagaagctagggcaacgcctggatgcc
attaggcaagtcctcagacgcctgaatgaatctgctgttttaagcccaatgaagacgggt
caataa
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