Polynucleobacter sp. KF022: PKF022_09600
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Entry
PKF022_09600 CDS
T10441
Symbol
kdsA1
Name
(GenBank) 2-dehydro-3-deoxyphosphooctonate aldolase 1
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
polk Polynucleobacter sp. KF022
Pathway
polk00541
Biosynthesis of various nucleotide sugars
polk01100
Metabolic pathways
polk01250
Biosynthesis of nucleotide sugars
Module
polk_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
polk00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
PKF022_09600 (kdsA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
polk01005
]
PKF022_09600 (kdsA1)
Enzymes [BR:
polk01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
PKF022_09600 (kdsA1)
Lipopolysaccharide biosynthesis proteins [BR:
polk01005
]
Lipid A
PKF022_09600 (kdsA1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
Motif
Other DBs
NCBI-ProteinID:
BDT75295
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Position
948938..949801
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AA seq
287 aa
AA seq
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MSTFKLCGYDVGLDRRFFLIAGPCVIESEQSAIDIAGQLKEITSTLKIPFIYKSSFDKAN
RSSGTSFRGLGMEKGLEILAKVKKQVGVSVLTDVHDISEIADVASVVDVLQTPAFLCRQT
DFIGACAQSGKPVNFKKGQFLSPHEMLNVIEKARVAAAEMNLPDQFMVCERGASFGYNNL
VSDMRSLAILRESKAPVVFDATHSVQLPGGQGSSSGGQREFVPVLARAAVAVGISGLFME
THPDPAKALSDGPNAVPLDRMKDLLQSLLAIDDVVKSTGTFLEDSFK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatttaagctatgcgggtatgacgttggtttagatcgtcgcttctttttaatt
gctggaccttgcgtcattgagtccgagcagtctgcgattgatattgccggccagttaaaa
gaaattacctcgaccttaaaaattccttttatctataaatcttcgtttgataaagccaac
cgttcgtcgggcacatcgttccgtggtttaggaatggaaaagggattggagattctggct
aaagtcaaaaaacaagtcggtgtatcggttctcacagatgtacatgacatcagcgagatt
gcagatgtagctagcgttgtggatgttttgcagacacccgcttttctttgcagacaaacc
gatttcataggggcctgtgcccaaagcggtaagcctgtgaattttaagaagggtcagttc
ctttctccacacgagatgctcaatgtgattgaaaaagctcgtgttgcagcggcggaaatg
aatcttccggatcaatttatggtttgtgagcgcggcgcttcctttggttacaacaatctt
gtttctgatatgcgtagcttggcaattttgcgtgagtccaaggcacctgtggtttttgat
gccactcattcggttcaattgcctggcggtcaaggtagctctagtggtgggcagcgtgag
tttgtgcccgttttagctcgtgcagcagtggctgtaggtatcagcggcctcttcatggag
acccatcccgatcctgcgaaagcattatctgatggccctaatgcggtgccgttagaccgc
atgaaagacctgctgcaatcattacttgcaattgacgatgttgttaaatcaaccggaacg
tttttagaagatagctttaagtaa
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