Polynucleobacter sp. KF022: PKF022_12920
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Entry
PKF022_12920 CDS
T10441
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
polk Polynucleobacter sp. KF022
Pathway
polk03030
DNA replication
polk03430
Mismatch repair
polk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
polk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PKF022_12920 (dnaE)
03430 Mismatch repair
PKF022_12920 (dnaE)
03440 Homologous recombination
PKF022_12920 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
polk03032
]
PKF022_12920 (dnaE)
03400 DNA repair and recombination proteins [BR:
polk03400
]
PKF022_12920 (dnaE)
Enzymes [BR:
polk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PKF022_12920 (dnaE)
DNA replication proteins [BR:
polk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PKF022_12920 (dnaE)
DNA repair and recombination proteins [BR:
polk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PKF022_12920 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BDT75627
LinkDB
All DBs
Position
complement(1287935..1291552)
Genome browser
AA seq
1205 aa
AA seq
DB search
MASPRFVHLRVHSEFSITDGVVRIDDAVAAAVKDEMGALAITDLSNLFGLVRFYTAARSS
GIKPIAGADVWISNPQDPDQPYRLLLLVQNHSGYLNLCELLSRASLDNQSRGRAEVDSAW
FSEPAAKAEDKAAKRTLSYGLIALSGARMGEVGTALLAGQEDHAKIVARRYEKLFPKSFY
IEVQRGGNPQDEKQLQLACHLASDLDLPVVATHPVQFMQRSDFTAHEARVCIAEGELLGN
PRRTKKFNEEQYFLTQEEMEKRFADLPVAIANSVEIAKRCNLSLVLGQPRLPDFPIPPGI
SLEDYLLQQSEIGLKRHMERNFPDAEEREKEMARYHERLVFEVKTISQMGFPGYFLIVAD
FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF
CQHGRDRVIQYVKDKYGKDAVSQIATFGTMAARAAIRDVGRVLEQGYNFVDGIAKLVPNK
PGQYMTIEMAKKEEKQLAEREKNEDEVRQLLSLAQQLEGMTRNVGMHAGGVLIAPGRLTD
FCPLYTQESKDQDSSSVISQFDKDDVEAIGLVKFDFLGLTTLTILAAAERWIKTLHADRR
DWNIGEIPLDDEKAFDVLKRANTVAVFQLESRGMQGMLREAKPDRFEDIIALVALYRPGP
MDLIPDFIERKHGRQKVEYPDPRIEPVLRETYGIMVYQEQVMQMAQMIGGYSLGGADMLR
RAMGKKKPEEMAQHRKIFSDGAKAGGISEGKANEIYDLMERFAGYGFNKSHAAAYALLAY
QTAWLKAYYPAEFMAANLSLAMDDTDKVKILYDDCLANNIRVFSPDINTGVYDFTPLRAP
DAAPDSPISHIRYGLGAVRGTGEAAIESIVKARETGGPFKDLFDFCARVDRRQVNRRAIE
ALMRAGAFDSLYRDSVPAGGNLYDIRSTLLASLARAIEAAEQAEASIHQVSLFEDAGEEN
RHLPELVREPVWSEKKRLQEEKNALGLCLTGHMFDAYRDETSHFIRQPLSKVTEGKDQLI
AGIITSARMLTGQRGRMMIATIDDGTAALEVTLYSEVYEPNRSWLKEDELLVAKVNVTPD
KFSGGMRIVSEAVMDITGARMRFARNVHVCIDNAIDIKMLRSQINPYLMANRVRDPKLGA
TAPAVPGSNDGMKGLMLTAAVTTSGGACLMQFPEELRIYPDDACLHGLNQILASKQKDPV
QVQYH
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaccccgttttgttcatctccgcgtccattccgagttttcgattacggatgga
gtcgttcgcattgatgatgcggtcgcagcagctgtcaaagacgagatgggtgccctagcc
atcacggatttaagtaatttatttggtttggtgcgtttttacactgctgcacgctcgagt
ggtatcaagccgattgcgggtgctgacgtttggattagcaatcctcaggatccggatcag
ccctatcgtttactgttattggtacaaaaccattctggctatctcaatttatgtgagttg
ctcagtagagcatctctcgataatcaatctcgcggtcgcgctgaagtggattcagcttgg
tttagtgagcctgccgctaaagcggaagataaagcagcaaaacgcactttgtcttatgga
ttgattgcactctcaggtgcgcgtatgggtgaggttggaacagcattgttagccggccaa
gaagatcatgccaagattgttgcgcggcgttatgaaaagctattcccaaagtctttctat
attgaagttcagcgcggcggcaatcctcaggatgaaaaacaactgcaactggcatgtcat
ctagctagtgatttggatttaccagtagttgcaacccacccagtgcagttcatgcagaga
agtgatttcacggcgcatgaggcccgtgtctgtattgccgaaggtgaattgctgggcaat
cctcgccgcactaaaaagtttaatgaagagcaatacttcctcactcaagaggagatggaa
aagcgtttcgctgatttgccagtagccatagccaactcggttgaaatcgctaagcgatgc
aatctctctttagttttaggtcagccgcgcttgccggattttccaattccgcctggaatt
agtttggaagattatttattgcaacaatctgagatcggtttaaagcgccatatggagcgc
aacttcccagatgcagaagagcgcgaaaaagaaatggcgcgttatcacgagcgtttagtg
ttcgaggtgaagaccatttctcaaatgggcttcccaggctacttcttaatcgtggccgac
tttatcaactgggcaaaaaataatggcgtaccggtgggtccaggccgtggatctggtgca
ggctctttagtggcttactcactcggtattaccgacttagatccactgcgttacaacttg
ctctttgagcgcttcttaaatccagagcgggtatcgatgcccgacttcgatattgacttc
tgtcagcacggtcgtgaccgtgtgatccagtacgtaaaagataaatacggtaaggatgca
gtcagtcagattgcgacttttggaacgatggctgctagagcggcgattcgcgatgtgggt
cgcgtactagagcagggctataactttgtggatggcattgctaagctggtgccgaataag
ccaggtcaatatatgactattgagatggcaaagaaggaagagaagcaattagccgaacgc
gagaagaatgaagacgaggtgcgtcaattactatctttggcgcagcagttagaaggcatg
actcgtaacgtcggtatgcacgcgggtggtgtgttgattgctcctgggcgtctcactgat
ttttgtccactgtatacccaagaaagtaaagatcaagacagtagctccgtcattagtcag
tttgataaagatgacgtagaagcgattggattggtaaagttcgatttcttgggcttaacc
accctaaccatcttggcggctgcagagcgctggattaaaactttacatgctgatcgcaga
gattggaatattggggagataccgctcgatgatgaaaaagcatttgatgttctcaagcgt
gctaatactgtcgcagtattccagctagaaagccgcggtatgcaaggcatgctgcgtgaa
gccaagcccgaccgctttgaagacatcattgctttggtggcattgtatcgcccaggtcca
atggatttgatcccagactttattgagcgtaagcatggccgtcaaaaagtagagtatccc
gatccgcgtattgagcctgttttgcgtgaaacctacggcatcatggtttaccaagagcag
gtgatgcagatggcacagatgattggcggctactcattaggcggcgctgacatgttgcgt
cgtgcgatgggtaagaaaaagccagaagaaatggcgcagcatcgcaagatctttagcgat
ggcgcaaaagccggtggtatctctgaaggtaaggccaacgagatctatgacttgatggag
cgttttgcgggctatggatttaataagtctcacgctgctgcatatgcacttctagcctat
caaactgcttggcttaaggcgtattacccagctgaatttatggcggccaacttatcgctc
gctatggatgacaccgataaggtaaagattctgtatgacgattgcttggccaacaacatt
cgggtgttctcaccagacattaatacgggagtttatgatttcacgccattgcgtgcacct
gatgcagcaccagattccccgattagtcatattcgttatggcttgggcgcggtgcgtggc
actggtgaggcagcaattgaatctatagttaaagcacgagaaaccggcggcccatttaaa
gatttgtttgatttctgcgcgcgcgtagatcgtcgccaggtgaatcgccgtgctatagaa
gcgctcatgcgtgctggtgcatttgatagcctgtatcgtgactccgtgcctgccggtggt
aatttgtatgacattcgctctaccttacttgcttctttagcaagagcgattgaagctgcc
gagcaagctgaggcttcgattcaccaggtgagcttgtttgaagatgctggcgaagagaat
cgccatctaccagagttagtacgcgagcctgtttggtctgaaaagaagcgtctgcaagaa
gagaagaatgctttaggactttgtttaacgggtcatatgtttgatgcctatcgtgacgag
acctcccacttcattcgtcaacctttatcaaaagtcactgaaggcaaagatcagctgatc
gctggcattatcacttcagcgcggatgttgactggccagcgcggtcgtatgatgattgca
accatcgatgatggcactgcagctttagaggtaactttgtatagcgaagtatatgaaccc
aatcgctcatggctcaaagaagacgagctattggttgctaaagtgaatgtgaccccagat
aagttctcaggcggtatgcggattgtgtctgaggctgttatggatattaccggtgctcga
atgcgttttgctcgcaacgtccatgtctgtattgataacgccatcgatatcaagatgctt
cgcagtcaaattaatccttacttgatggccaatcgtgtcagagatcctaagttaggagct
actgctccagctgtaccaggatcaaatgatggcatgaagggcttgatgttgactgctgcg
gtgacaactagcggcggcgcctgtttaatgcagttcccagaagagctgcgcatctatcca
gacgacgcttgtttgcatggcctgaatcagattttggcttccaaacaaaaagaccctgtg
caggttcagtaccactaa
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integrated database retrieval system
