Polynucleobacter sp. SHI8: PSHI8_05320
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Entry
PSHI8_05320 CDS
T10387
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
poln Polynucleobacter sp. SHI8
Pathway
poln03030
DNA replication
poln03430
Mismatch repair
poln03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
poln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSHI8_05320 (dnaE)
03430 Mismatch repair
PSHI8_05320 (dnaE)
03440 Homologous recombination
PSHI8_05320 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poln03032
]
PSHI8_05320 (dnaE)
03400 DNA repair and recombination proteins [BR:
poln03400
]
PSHI8_05320 (dnaE)
Enzymes [BR:
poln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSHI8_05320 (dnaE)
DNA replication proteins [BR:
poln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSHI8_05320 (dnaE)
DNA repair and recombination proteins [BR:
poln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSHI8_05320 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BDW12896
LinkDB
All DBs
Position
526322..529921
Genome browser
AA seq
1199 aa
AA seq
DB search
MPSPNFVHLRLHSEYSIVDGIVRLDDAIKQAVADQMGALALTDLMNFFGLIKFYSNARSA
GLKPIAGADVWISHPTQSNKAHRALLLVKNTQGYLNLCELLSKATLENQHLGRHEIHPSW
FSLPSTSSMASQQPFTLSEGLIVLSGGMQGDIGQALLSEQFEVAEQCARQWQDLFPGNFY
IEVSRIGQEQEEKYIHLVAAIASRLNIPLVATHPIQFMQPDDFRAHEIRVCVADGDQLGN
PKRVVRFSPEQYFKTTEQMMELFADLPSALANSVEIAKRCNLILQLGKPKLPDFPTPDGL
TLEAYLEKQAHTGLQHRLLHLYPDTEKRDQESDRYISRLDFEIKTIIQMGFPGYFLIVAD
FISWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDF
CQLGRDRVIQYVKDKYGHEAVSQIATFGTMAARGAIKDVGRALQQPYGFVDGISKLIEAK
PGAQITIQEAMKNTPALDDLYQNNEEAKNLIDHAIQLEGITRNVGMHAGGVLISPGKLTD
FCPLYSQSGKDDQNSGIVSQFDKDDVEAVGLVKFDFLGLTTLTILDLTQKYIHQLYPEKK
DWQLEDIPLDDPQAFDILKAANTVAIFQLESRGMQNMLKDAKPDRFEDIIALVALYRPGP
MDLIPDYIARKHLKQVVVYPDERVIPVLEETYGIMVYQEQVMQMAQIVGGYSLGGADLLR
RAMGKKKPEEMAIQSKIFAEGAMKSGLTQEKADEIFKNMEAFAGYGFNKSHAAAYAVLAY
QTAWLKAHYVAEFMAANLSLAMDDTDKVKILFEDAKDNQLEILMPDINSGEYRFLPILKE
EEKNQGGSRTIKYGLGAVRGTGENAITEIVRVRAEKPFVHLFDFCQRVDRRIVNRRAIEA
LIRAGAFDGIAPGGMDGRATLLASLPNAMQAAEQAIASANQTNLFAMPGEEDGSEPEYIS
IAPWMKKMRLQEEKSALGFCISGHLFDVYAQEVRQFVRVPIEKISPKSGEKLVAGIIVSQ
RTKKTSNGGVMNNIVLDDGTGQIELVVYEDTYENYRSCFVEDELLIAKILTKVQPSTENY
SGSVRHSILAAMSMPAARLRYAKSIHFEMTSQVNLKTFKEKAQSYIHEQNASRQTSADSV
QHINLPMTADLVSNSGVCQIQFPQTWNMYPDDRAIQGFSNLLHQLGITSALQVKYALQG
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgccaagtccaaattttgttcatttacgtctgcattctgaatattccattgttgatgga
atagttcggctagatgacgccattaaacaagcagtcgctgatcagatgggggcgcttgcg
ttaacagacctcatgaatttttttggtcttattaaattttactcaaatgcacggagtgca
ggattaaaaccaattgctggagcggatgtttggatttcgcatccgacacaaagcaataaa
gctcatcgggctcttttactggttaaaaacacccagggttatctcaatttatgtgagcta
ttatccaaagccaccctagaaaaccaacacttaggtcgtcatgaaatacatcctagttgg
ttttccttaccaagtacctcctccatggcgagtcaacaaccctttacattatctgaagga
ttaattgttctttctggtggtatgcaaggagatattggacaagcattactttcagagcaa
ttcgaagttgctgagcagtgtgcacgtcaatggcaggatttatttcccggaaatttttat
attgaagttagccgtatcgggcaagagcaggaagaaaaatatatccacttagttgcagcg
attgcaagtcgtctcaatattccattagttgccacacatcccattcaatttatgcaacca
gatgatttcagggctcatgaaatcagagtatgtgttgcagatggagatcaattagggaat
ccaaaaagggttgttcgtttttctccagaacaatattttaagaccactgagcaaatgatg
gagttgtttgctgatttaccaagtgcgctagccaattcagttgaaattgcgaaacgctgt
aatttaatattgcagttaggtaaaccaaagttacctgatttcccaacgcctgacgggctt
acactagaagcttatctcgaaaaacaggcgcacacagggttacagcatcgtttattgcat
ttgtaccctgatactgaaaaacgcgatcaggaatctgatcgatatatcagtcgattggat
tttgagattaaaaccattattcagatgggatttcctggatattttttaattgttgcggac
tttatatcctgggctaaaaacaatggagttcccgtaggacctggcaggggatctggagct
ggttccttagttgcttattccttgggtattactgatcttgatccgctgagatataactta
ctctttgaacgctttttaaatccagagcgagtttctatgcccgactttgatattgacttt
tgtcagttgggtcgtgaccgtgtcattcagtatgtgaaagataaatatggtcatgaagct
gttagtcaaatcgcaacatttggcacgatggctgctagaggagcaatcaaagatgtcggt
agagctctgcaacaaccatatggttttgttgatggaatttcgaagctgatagaagctaag
cctggagcacaaatcacgattcaggaagcgatgaaaaatacgcctgctttagatgatttg
tatcaaaacaatgaagaggcgaaaaacctcattgaccatgcaatacagctagaaggaatt
accagaaacgtggggatgcatgctggcggagtgttaatttcaccaggaaagttgacggat
ttttgcccactctattctcaatccgggaaagatgatcagaattcaggtattgtcagtcag
tttgataaagatgacgttgaggctgttggccttgtcaaattcgacttcttaggtttgacc
actttaaccatacttgatctcacccaaaaatatatacaccaactttatcctgagaagaaa
gattggcaattagaggatattccactcgatgatcctcaagcctttgatattttaaaggcc
gcaaataccgttgccatcttccaattggaaagtcgtggcatgcagaatatgcttaaagat
gcaaagccagaccgctttgaagacattattgccctagttgctctttatcgtcccggacca
atggatttgataccggattacatcgcgcgtaaacacctcaagcaagtagttgtttatcca
gatgagcgagtcattcctgttcttgaagaaacctatggaattatggtgtaccaagagcaa
gtgatgcaaatggcacaaatcgtgggtggctattctctaggcggtgcagatttattgcgt
cgcgcgatgggtaagaaaaaaccagaagagatggcgatacaaagcaaaatatttgctgaa
ggcgcaatgaaaagtggcctcacccaagaaaaagccgatgagatctttaaaaacatggaa
gcctttgctggctatgggtttaataaatcgcatgctgccgcttacgctgttttggcctat
cagacggcttggttaaaagcgcattatgtcgcagaatttatggcggccaacttgtcattg
gcaatggatgatacggataaagtcaaaattctatttgaagatgcaaaagataatcagcta
gaaattttgatgcctgatattaattcaggagaataccgtttcctacctatcttaaaagaa
gaagaaaaaaaccaaggaggttctcgaaccatcaaatatggtttgggcgcagtaaggggt
acaggtgagaacgccatcacagaaattgtgagagttcgagctgaaaaacctttcgtacat
ttatttgatttttgccaacgagtagaccgtcgcattgtgaatcgtcgtgcgattgaggca
ttaatcagggcaggagcttttgatggcattgccccaggtggtatggatgggcgagccacc
ttactagcgtcccttcccaacgcgatgcaagcagcagagcaggccatcgcttctgcgaat
cagacgaatttatttgcgatgcctggtgaggaagacggctctgagccagaatatatatcg
atcgcaccttggatgaaaaagatgcgcttacaagaagaaaaatctgccttagggttttgt
atttcagggcatttatttgatgtctatgcccaagaagttcgacaatttgtaagagttcca
atagaaaagatttcaccaaaaagtggtgaaaaattagttgccggaatcatcgtttcgcaa
cgaaccaaaaaaaccagtaatggtggtgtaatgaataatattgttctagatgacggtacg
ggtcaaatagagttggtggtctatgaagacacctatgaaaactaccgatcttgttttgtt
gaggatgagttattaattgctaagatcttgaccaaggtacagccttcgacagaaaactat
tcaggaagtgtaaggcattcaatcctagccgcgatgtcaatgccagcagcaaggttgcgt
tacgcgaaaagtatacactttgagatgacttctcaagtgaatctaaaaacgtttaaagaa
aaagcccaatcctacattcatgagcaaaatgcctctcgccaaacatccgctgattccgta
caacacattaacttgccaatgactgctgatctcgtctccaactctggggtttgccaaatt
cagtttccgcaaacttggaatatgtatccagatgaccgagcgattcaggggttcagtaat
ttgctacatcaattaggcataacatccgctttgcaagttaaatacgcgttacagggatag
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