Polynucleobacter sp. SHI8: PSHI8_06420
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Entry
PSHI8_06420 CDS
T10387
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
poln Polynucleobacter sp. SHI8
Pathway
poln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSHI8_06420 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poln03019
]
PSHI8_06420 (pnp)
03016 Transfer RNA biogenesis [BR:
poln03016
]
PSHI8_06420 (pnp)
Enzymes [BR:
poln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PSHI8_06420 (pnp)
Messenger RNA biogenesis [BR:
poln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSHI8_06420 (pnp)
Transfer RNA biogenesis [BR:
poln03016
]
Prokaryotic type
tRNA degradation factors
PSHI8_06420 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
S1_RRP5
DUF5813
Methyltransf_FA
KH_NusA_2nd
S1_2
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
BDW13006
LinkDB
All DBs
Position
640849..643032
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AA seq
727 aa
AA seq
DB search
MSMFNKVTKTFQWGKHTVTMETGEIARQSGGAVLVNVDDTVVLATVVAAKNAKPGQDFFP
LTVDYVEKTYAAGKIPGGFFRREGRPSEGETLTSRLIDRPIRPLFPEDFYNEVQIVIHVM
SINPEVPADIPSLIGASAALAISGIPFHGPLGAARVGYKDGEYMLNPTRSEQLESQLDLI
VAGTQNAVLMVESEAHELSEEIMLGGVVYGHDQAKIAIDAIQDLVREAGKPEWDWKPAPK
NEELISKVTALAEEGLRAAYQIRQKQARSTELKQVTSKVLEQLSAEGDVDDVAVGNILFG
LESKIVRSQVLSGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTA
RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKSE
DFAYSIRLVSEITESNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILDGNRFAVLT
DILGDEDHLGDMDFKVAGTANGVTALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE
SMSTVRTELSEHAPRMVTIKIHPDKIREVIGKGGATIQALTKETGCSIDIQDDGTVTIAS
TSASGMEEAKRQIEGITAEAEVGKIYEGPVVKILEFGALVNILPGKDGLLHISEIAHERV
KEVKDFLQEGQIVKVKLLAADERGRLKLSMKALSPEEGGPLPPVAQQPAIVAEEAAPVVQ
EQPPAEQ
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgtttaataaagtaacaaaaacgtttcaatggggtaagcacactgtaactatg
gagactggcgaaattgcacgtcaatctggtggtgctgtattagtaaatgtggatgatacc
gttgtattagctactgtagtagctgccaagaatgctaaacctggccaggattttttccca
ttaacagttgattatgttgaaaaaacgtatgcggcaggtaagattccaggcggttttttc
cgtcgtgaaggacgtccatctgaaggcgaaacattaacttcccgtttgattgaccgtccg
atccgcccattattccctgaagatttttataacgaagtgcagattgtgattcatgtaatg
tcgatcaatcctgaagtgccagcagatattccatcattgattggtgcatctgcagctctt
gcgatttctggtattccattccatggccccttaggcgctgccagagttggttacaaagat
ggtgagtacatgctcaatccaactcgttcagagcaattagaaagtcagttagatttaatt
gttgctggtacacaaaatgcagtgttaatggttgaatcagaggctcacgagttgtcagaa
gaaatcatgttaggcggagttgtatacggacatgatcaagcaaaaatagccattgatgcg
attcaagatttagtacgcgaagctggtaaaccagaatgggattggaagcctgcaccgaag
aatgaagaactcatttctaaggtaacagccttagctgaagaaggtcttcgtgctgcttat
caaattcgtcaaaaacaagcacgttcaacagagctcaaacaagtaacttctaaagttctt
gagcagttatctgccgaaggtgacgttgatgatgttgctgttggaaatattttgtttggt
ttagagtccaagattgttcgtagccaagttctcagtggagagccacgtattgacggtcgt
gatacaagaacagttcgtccgattgaaatcagaacaggtgtattgccacgcacgcatggc
tccgcattatttacacgcggtgaaactcaagccttagtagtagcaacattagggaccgca
agagatgaacaaattatcgacgccttagaaggtgagtatcgtgatcgtttcatgttccac
tacaacatgcctccatttgccacaggtgaaactggtcgcgtaggaagtcctaagcgtcgt
gaaattggtcacggtcgtttggcaaaacgtgccttaattcctgtattgccaaagtctgaa
gattttgcatacagtattcgtttggtatcagaaattactgaatcaaatggttcatcttcc
atggcttccgtttgcggtggatgcttagccttgatggatgccggagttccagtaaaagcg
catgtcgccggagttgcaatgggcctgattttagatggtaaccgtttcgcagtgttaaca
gatattcttggtgatgaagatcacttaggtgatatggactttaaagtggctggtactgca
aatggcgtaactgcgttgcagatggatattaaagtacaaggtattacgaaagaaattatg
caagttgctttagcgcaagctaaagaaggtcgtttgcatattctgtcaaaaatgcaagag
tcaatgtctacagttcgtactgagttgtcagagcatgctccaagaatggttacgattaag
atccatccagacaagattcgtgaagtgattggtaagggtggagcgacgattcaggcatta
acgaaagaaactggttgcagtattgatattcaagatgacggtacagtaacgattgcttca
acaagtgcttcaggcatggaagaggcaaagcgtcaaattgaaggaataactgctgaagcc
gaagtgggcaaaatctatgaaggcccagtggtcaagattttagagtttggtgcattagtt
aatattcttccaggcaaagatggtttattacatatctctgaaatcgctcatgagcgcgtt
aaggaagtaaaagacttcttgcaagaaggacaaatcgttaaagtgaagttgttagctgct
gacgagcgtggtcgtttgaagttgtctatgaaagcattgtcacctgaagaaggtggtcca
ttgcctccagtagcacaacaaccagcgattgttgctgaagaggctgctcctgtagttcaa
gagcaaccacctgcagaacagtaa
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