Polynucleobacter sp. SHI8: PSHI8_09550
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Entry
PSHI8_09550 CDS
T10387
Name
(GenBank) hypothetical protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
poln Polynucleobacter sp. SHI8
Brite
KEGG Orthology (KO) [BR:
poln00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poln03400
]
PSHI8_09550
Enzymes [BR:
poln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSHI8_09550
DNA repair and recombination proteins [BR:
poln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PSHI8_09550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDW13319
LinkDB
All DBs
Position
961489..964944
Genome browser
AA seq
1151 aa
AA seq
DB search
MIDELTKISCDPKESVVVEACAGSGKTWLLISRIFRLLLIGVKPSQILAITFTRKAAQEM
NDRLATLLLEMHQKPDAEVLQELMIRGLSAEEAQQQLPHARALYEEVLTQPQVIAMETFH
GWFSRVSSAAPITSGIVNQGSLREDRQRLLKEAMADWWKQLGAGEGEFAILQEHYLRLLE
LISKKTADAFLEGPSSILEQLSAWQQYVDSLPGGKDPLQMLEEKLPLLHQPSPCHNLQDE
TQFDWQGLRTCYQWYSQSLASNDVKLTIPLRQLLDAQQAGAQEETLIHLLKSALLNKTAP
HNPKPVVLNCSTALNNILTDAGRADLQTEIPRLFRVWLDLLDRYKDWQKEQNLYQLNQSW
IILGTSIANHFREYKKNHRILDFNDLEMNVAQLLKDEVLASYIQVRLDAKYKHILIDEFQ
DTNPTQWMILKAWLSGYGTAGDLPKIFVVGDPKQSIYRFRKADARLFKAVQDFLQKDYKA
KLLNKDDTRRNPPAVVQAVNQVFTQVKEQIPDYRFINHQTLWKNHPKTPLDTEVFCLELI
PKIGTETASENRNPFQEGLLDSTRGAAAQQNLMEAKQVASIIRHWLATKYVKDDQSESGV
RTANPSDFYILVRNKTHVLEMETALRIYGLPYQSPRKGGLLQTLEAADIRALLNVLLTPS
NNLALAQVLRSPIFSCDEQQLQQLASLANKQSWWNHLEHIPQENMQKAHRLLNRWRGLAN
HMPVHDLLDCIYEEGEVYKNYTRVCPPLMHTKVLANLEAFLKLALDTNGGRYPSLSRLIE
ELQILTKGLETETPDEGEVLEASDEEDDEDIEADQTAIKIMTIHAAKGLEAPFVFLMNTN
YVPSEKDSTGVLMDWPTNQNAPNLMFAYQKDGLNTILQPIKDEENQIAQRENANLLYVAM
TRSKQSFVACGNGDLKDKSWYALMMRAQIAVKSIADIVPEEEHLPIAIQATSIVNDTRLK
FPEIPKIPFKDVPQVQDEENKTFEETNQSSTQENKPKQEILALGTWVHWFLEQTTQEPIH
GEISFEILQKMATGQKAPTDITIKAIPIVQKILNTDHLKDYFYGHHIVAIWNELEMIGEG
GVLFKIDRLVELENELVILDYKLTIPEESTEFFNKYHNQLKNYQALVKKLRQDKPVRAVL
VDQHANVKEIV
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgattgacgaactgaccaaaatttcctgtgaccctaaagaatctgttgtggtggaggcc
tgtgcaggtagtggtaaaacttggctgcttatttctaggatctttcgcttactcttgata
ggtgttaaaccaagtcaaattttagctatcacatttactcgcaaagccgcgcaggagatg
aatgatcgtttggccacacttctattagagatgcatcaaaaaccagatgccgaagtcctc
caagagttaatgattcggggcttaagtgcagaagaagctcagcaacaattaccccatgct
agagccctatatgaagaagtattaactcagccccaagtgattgccatggaaaccttccat
ggttggtttagcagagtgagctcagctgcaccaattacctctggcattgtcaatcaagga
agtcttagagaagatcgacaacgcttattaaaagaagcgatggccgattggtggaagcaa
cttggtgctggcgaaggtgagtttgcaatactacaagaacattacttacgcctattggaa
ttgatttctaaaaaaacagctgacgcgtttttagagggtccttcgagtattttggagcaa
ttgagcgcttggcaacagtatgtggattcgttaccaggaggtaaagatccactacaaatg
ctagaagaaaaattacctcttttgcatcaaccaagtccttgtcacaatttacaagacgaa
actcaatttgattggcaaggtttacgaacatgctatcaatggtattcgcaaagtttggct
agtaacgatgtgaagctaacaatacccctaagacaattattagatgctcaacaagcagga
gctcaggaagaaactttaatccatctgctcaagtcggcattacttaataaaacagcacct
cacaacccaaaaccggttgtcttaaattgttctacagctttaaataatattttgacagat
gccggacgagcagatttgcagactgaaattccaaggctatttagagtttggcttgattta
ctggatagatataaagattggcaaaaagaacaaaacctttatcaactcaatcagtcatgg
atcatcttaggaacctcgattgcgaaccacttccgagaatataaaaagaatcaccgcatt
ctggacttcaatgatcttgagatgaatgtcgcgcagttattaaaagatgaagtgcttgcg
agttatattcaagtaaggctcgatgccaaatataaacatatcttgattgatgagtttcag
gacacgaatcctacccaatggatgattctgaaagcttggttaagtgggtatggcacagca
ggagacctgccgaaaatatttgtggtgggggatcctaagcagtccatttatcgttttcgt
aaagcagatgcacgcttatttaaagccgtacaagatttcctgcaaaaggattacaaagca
aaactactcaataaagacgatacaagacgcaatccaccggctgttgttcaagccgtcaat
caagtctttacccaagtgaaagaacaaattcccgattaccggtttatcaatcatcaaacc
ctctggaagaaccatccaaagacgcctctcgatacagaggtattttgcctagagctgata
cccaagattggcacagaaactgcttctgaaaacagaaatccatttcaggaagggctatta
gatagcacccgaggagcagccgcacagcaaaacttaatggaagccaaacaagtcgctagc
atcatccgtcattggttagccaccaaatacgtaaaagatgatcagagtgaatcaggagtt
cgaacagcgaacccaagtgatttttatattctagtccgcaacaaaacccatgtcctagaa
atggagacagccctgaggatctatggactgccatatcaaagtccccgtaagggcggatta
ttgcaaaccttagaggcagccgatattcgtgcgctcctcaatgtattactcactccgagt
aataatttggctctggctcaagtattgcgaagtccgatattttcctgcgatgagcaacag
ttacaacaattagcgagtttggcgaataagcaatcttggtggaatcatctagagcatatt
ccgcaagaaaatatgcaaaaagcgcatcgcttactgaatcgttggcgaggacttgcgaat
cacatgccagtacatgatttactcgattgtatctatgaagagggtgaggtgtataaaaat
tacaccagagtttgcccgccgctgatgcataccaaggtgcttgcgaatctagaagcgttt
ttgaagctggcattagataccaatggcggaagatatccatccttaagtcgattgattgaa
gagttacaaatactcacgaagggattggaaaccgaaactcccgatgagggggaagtacta
gaagcgagtgatgaagaagacgatgaggatatagaggcggatcaaaccgctattaagatc
atgaccattcatgcggcgaagggattggaagccccatttgtgtttttaatgaataccaac
tatgttccatcagaaaaagacagtaccggtgttttaatggattggcccaccaatcaaaat
gcaccaaacctcatgttcgcttatcaaaaagacggcttgaataccatcctacagccgata
aaagacgaagagaaccaaattgcacaaagagaaaatgccaatttactctatgtggccatg
actcgttcgaaacaaagttttgtggcatgtggcaatggtgatttaaaagataaatcttgg
tatgcactgatgatgagggcgcaaatagccgttaagtccatcgcggatattgtgcctgaa
gaagaacatctcccgatagcaatccaagcaacatctattgtcaatgacactcggttgaag
ttcccggagattccaaagataccattcaaagatgtgccgcaagttcaggatgaagagaat
aaaacctttgaagaaaccaatcaatcaagtacccaagaaaacaaaccgaagcaagagatc
ctggccttaggaacttgggtgcactggtttcttgagcaaactacccaagaacctatccat
ggtgagataagtttcgagatcctccagaaaatggcgacagggcaaaaagcacctacagat
ataactatcaaggcgatacccattgtgcagaagattctgaatacggaccatttaaaagat
tatttttatggccaccacattgtggctatttggaatgaattagaaatgattggtgaagga
ggagttttattcaaaatcgatcgattagtagagctagaaaatgaactcgtgatcttggac
tataagttaacgattccagaagagagtactgagttctttaataaatatcacaatcaactc
aaaaattaccaagcattagtgaagaaacttcgccaagataagccagtacgagctgtactt
gtagatcaacatgccaatgtcaaagaaattgtataa
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