Polynucleobacter sp. SHI8: PSHI8_09700
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Entry
PSHI8_09700 CDS
T10387
Name
(GenBank) hypothetical protein
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
poln Polynucleobacter sp. SHI8
Pathway
poln03030
DNA replication
poln03430
Mismatch repair
poln03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
poln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSHI8_09700
03430 Mismatch repair
PSHI8_09700
03440 Homologous recombination
PSHI8_09700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poln03032
]
PSHI8_09700
03400 DNA repair and recombination proteins [BR:
poln03400
]
PSHI8_09700
Enzymes [BR:
poln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSHI8_09700
DNA replication proteins [BR:
poln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSHI8_09700
DNA repair and recombination proteins [BR:
poln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSHI8_09700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
DNA_pol3_gamma3
AAA
RuvB_N
DNA_pol3_tau_5
AAA_22
AAA_16
AAA_18
AAA_14
AAA_19
AAA_5
TsaE
AAA_assoc_2
RCF1-5-like_lid
nSTAND3
AAA_30
RNA_pol_Rpb1_3
SKI
DUF2561
AAA_28
Rad17
Motif
Other DBs
NCBI-ProteinID:
BDW13334
LinkDB
All DBs
Position
976015..977742
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AA seq
575 aa
AA seq
DB search
MSDISLFESSELPTPGLALARKWRPRNFATLIGQDHVVQALSHALDQNRLHHAWLFTGTR
GVGKTTISRILAKSLNCTGTIDNPITQPTSTPCGQCAACTEIDAGRFVDYVEMDAASNRG
INDMISLLEKAVYGPTSGRFKVFMIDEVHMLTNQAFNSMLKTLEEPPPHMKFILATTDPQ
KIPVTVLSRCLQFNLKQMPSTLIVNHLKTVLSAEQIEIHEGALRIIAKSARGSMRDALSL
TDQAIAYSSSNMTEEAVRNMLGSLDDRYLIRMVDALASKNGKDLIDVSSEMGLMSISFTT
ALQDLASLLQKIAMAQVIPESVLEEWPEAQDIVRLASLISKEEVQLFYQIAITSRADLLL
APEEETGFMMTLLRMLAFMPDDGQSNSLSTPSAPRSPAPPAPQGLNKPKVPAVPVKPSPS
IAPPATPSANTVSTTTPPSAGARSLQELSPESWRDIVNQLALKGFEGQFALQTALISYQD
KSGTIFIKLATDLPQLATPSSIQLLADALQRYFNIPFKITIEKSTEVVTVAHLEAKDQAI
AKTELEKTVSVDPFLEQLKQEIGVTVIEGSIRPLS
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatatctctttatttgaatcctctgaattacccactcctggcttagctttagcc
agaaaatggcgtcctcgtaactttgctactctcatcggtcaagaccatgttgtccaagcc
ctgagccatgcactcgatcaaaatcgcttacaccatgcatggttattcaccggtacgaga
ggcgtcggtaaaactacgatttcgcgaatcctggcaaagtcccttaactgtacagggacg
atcgataatcccatcacacaacctacctcaaccccctgtggacaatgtgccgcttgtacc
gagattgatgctggtagatttgtggattatgttgagatggacgcggccagtaatcgcgga
atcaatgacatgatttccttactcgaaaaagcagtctatggaccaacgagtggcagattt
aaagtcttcatgattgatgaggtgcacatgctcaccaatcaagcgtttaattcgatgtta
aaaacactggaagagccgccaccgcatatgaagtttattttggcgacgaccgatccacaa
aaaatacccgttactgttctgtcccgttgcttgcaatttaacctcaagcaaatgccttct
accttgatcgtgaatcatctcaaaaccgttttatctgccgagcagattgagattcatgaa
ggggcactgcgcatcattgccaaatcggcaagaggttcgatgcgtgatgcgttgtcactt
accgatcaagcgattgcgtattcgtcttcaaatatgacagaagaagccgtcagaaacatg
ctcggctcattagatgatcgttatctcattcgcatggtggatgctcttgcaagtaaaaat
ggcaaagacttaattgatgtcagttctgagatgggactgatgagtatttcttttacgaca
gcattgcaggatttggcttctttattgcaaaaaattgcgatggcacaagtcattccagaa
tctgttctagaagaatggcctgaggcacaggatattgtgcgtttagcgagcttgatctcc
aaagaagaagtacagctgttctatcagattgccattaccagtcgtgctgatttactttta
gccccagaagaagagactggtttcatgatgaccttgctcagaatgttggcatttatgcca
gacgatggtcagagcaatagtttatcaacaccttcagcgccaaggtctcctgcgccacca
gccccacaaggattgaataaacccaaggtaccggctgtaccagtcaaaccatcaccaagc
atagcaccacctgcaacaccttccgcaaatacagtaagcacgaccactccaccatcagca
ggagcgcgatcactccaagagttatcgcccgagtcatggcgtgatatcgtcaatcaatta
gcgctgaaaggttttgaagggcagtttgctttgcaaactgccttgatttcttatcaagat
aaatcaggcacgatttttatcaaactggcaactgatttaccgcaacttgctacgccatca
tcgattcagctattagcagatgcattgcaaaggtatttcaacataccgtttaaaattacc
attgaaaaaagtactgaagtggtgactgtggcgcacttagaagcaaaagatcaagcgatt
gctaaaaccgaattagaaaagacggtttccgtagatccctttttagagcaactcaaacaa
gagattggtgttactgtcattgaagggtcgatacgaccattgtcataa
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