Polynucleobacter sp. SHI8: PSHI8_11690
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Entry
PSHI8_11690 CDS
T10387
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
poln Polynucleobacter sp. SHI8
Pathway
poln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
poln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSHI8_11690 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poln03400
]
PSHI8_11690 (mfd)
Enzymes [BR:
poln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSHI8_11690 (mfd)
DNA repair and recombination proteins [BR:
poln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSHI8_11690 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BDW13533
LinkDB
All DBs
Position
complement(1187877..1191404)
Genome browser
AA seq
1175 aa
AA seq
DB search
MSDNKVVKTNTPPSLIQLTPPLTGPELGKRFTWNHCIGSSDAGVIAEHAKFYRSNFSIMV
VICSEPTTAQRLSQEIPLFNSELRVSLLPDWEILPYDQFSPHHDLISERLKTLHEMMTGV
CDVVIIPISSVLTRLAPPEFLAANTFFFKQGSSINESALHHQLQQGGYDPVSAVVRPGEY
SIRGGLIDLFPMGAALPFRIDLFGDVIDQIKVFDPDTQRSLYPVKEIKLLPGHEFPFHEQ
ARKDFRGKWREVFEGNPAKCPLYKDVGLGIPGAGIESYLPLFFDQTSVIFDYLPKSDHPA
WIWGVGNLQVAIQEYWKGIQERYHFLSHDSEHPILPPAELYQNEESFFALLKPFARVFLD
SPEKDSDNPYFSPPPDVAVIRRNKDPILQLKQYVRASTHRILICADSPGRREAIKQLLDE
SVEPDAKDNFHVEEFSNIPEFLVSEQRIGMVVAPLLDGFISKHLQLTLLTESEIFANSSE
QRKAGKIGKKDQATNVDYLVRDLSELKIGDPVVHSEHGIGRYQGLLIIDLGQGDEEFLHL
RYANSATLYVPVHQLHLISRYSGSDPENAPLHNLGSGQWEKAKRKAAQQIRDTAAELLNI
YAKRALRHGHAFQYSSHDYDAFAESFGFQETIDQQNAIDEVIKDMTSGQPMDRLICGDVG
FGKTEVALRASFVAVMGGKQVAVLAPTTLLSEQHANTWKNRFADWPVKIVEVSRFQSAKE
IKNALESLESGHADIIIGTHKLLSPEIKFNRLGLVIIDEEHRFGVRQKETFKALRAEVDV
LTLTATPIPRTLGMALEGLRELSVIATAPQKRLAIKTFVRREGDGVIREAILRELKRGGQ
VYFLHNEVETIRNRRQALEKLIPEARVGVAHGQMHERNLEQVMHDFVAKRCNVLLCSTII
ETGIDVPSANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVPDPEGLTKQAKLRLD
AIVSMEELGSGFYLAMHDLEIRGAGEVLGDKQSGDIHEIGFQLYTEMLNKAISELKKGKE
PDLLSPMHAITDISLGCPALLPNAYCPDVHERLSLYKRLSSANIHEDIDDIHSEIIDRFG
DLPESAKTLLDNHRLRLQMEKLGIKKIEASAEAIKIQFIPKPNIDSMKIIQLIQKDRFVQ
LSGPDRLRISPNPANGFQLLEQRTFALKKLLSYLS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtccgataacaaagttgtaaaaacgaatactccgccaagcttgattcagctcacgccc
cccttaactggacctgagctcgggaaacgctttacctggaatcattgtattggttcaagt
gacgcaggtgtcattgcagaacacgctaaattttatagaagtaatttttctattatggtg
gtgatttgtagtgaaccaacgactgctcaaagactctcccaggaaataccactgttcaac
tccgaacttcgggtttctttactgccagattgggagattttgccttatgatcagttttca
ccgcaccatgacctcatttctgaacgactaaaaacgcttcatgaaatgatgacaggtgtt
tgcgatgtggtcattatccctattagttctgttcttactcgccttgccccgcctgaattc
ttagctgctaatactttctttttcaaacaaggtagtagcattaatgaatctgccttacac
caccaacttcaacaaggtggctatgatcctgtatctgcagttgtaaggcctggtgagtac
agtatccgtggtggcttaattgacttatttccgatgggagcagcactgcccttcagaatt
gatttgtttggcgatgtgatcgatcaaatcaaagtctttgaccctgatacgcaacgcagt
ctctaccctgtaaaagaaattaaactactgcctggtcatgaattcccatttcatgaacaa
gcccgtaaagattttcgtggtaagtggcgtgaagtttttgagggcaatcctgctaaatgc
cctctatacaaagatgttggcttaggtatccctggtgcaggtattgagtcctacctacct
ctattttttgatcagacatcggtcatttttgattacttacctaaatctgatcatcctgct
tggatttggggggttggaaacttacaagtagccatacaggagtattggaaagggattcaa
gagcgctatcattttttatcacacgactctgaacacccgattctaccgccggcagaactt
tatcaaaacgaagagagttttttcgctcttctcaaaccatttgctagagtcttcttagat
agtccagaaaaagattcagataatccttatttttcacccccaccagatgtagcggtgatt
cgccgtaataaagaccccatattgcaattaaaacaatatgttcgtgcgtctactcatcga
attttaatttgcgccgatagtcccggtcgtagagaagcgattaaacaattgctcgatgaa
tctgtcgagcctgatgccaaagacaattttcatgttgaagaattttccaatattcctgaa
tttttagtcagtgaacaaagaattggtatggtggttgcacctttgttagatggttttatt
tctaagcatcttcaacttaccctgctgactgaatcagaaatttttgcgaactcttcagaa
caaagaaaagctggaaaaattggtaaaaaagatcaagcaacaaatgtcgattacttggta
agagatctttctgaattaaaaatcggcgaccccgttgttcattcagagcatgggatcggc
cgctatcagggattattgatcattgatctggggcaaggtgatgaagaatttttacatcta
cgatatgccaatagcgctactttatatgttccagttcatcaattacatttaatttctcgg
tactcaggttctgatcctgagaatgcacctcttcacaatctaggttctggccaatgggaa
aaagccaaaagaaaggccgctcaacaaatcagagacacggctgctgaacttctgaatatt
tatgcaaaaagagctctcagacacggccatgcttttcaatactcaagccatgattatgat
gcgtttgctgaaagttttggatttcaagaaaccattgatcagcaaaatgcgattgatgaa
gtaattaaagatatgacgagcggtcaacccatggatcgcttaatttgtggtgatgttggc
tttggcaaaactgaggtcgcgttaagggcaagttttgttgctgtaatggggggtaaacaa
gttgctgttttagcacctaccaccctattgtctgagcaacatgcgaatacttggaaaaat
cgctttgccgattggcctgtaaaaattgttgaagtctcgcgttttcagtcagcaaaagaa
attaaaaatgcactcgagtctcttgagagtggtcatgccgatatcattatcggcacgcat
aaactactgtctcctgaaattaaatttaatcgcttaggactcgtaattattgatgaagaa
catcgtttcggggttaggcaaaaagaaacgttcaaagcattacgcgctgaggtagatgtt
ctaacattgacagccaccccaattccacgcactttaggaatggcccttgagggcttaaga
gagttatcagtcattgcaacggctccccaaaaacgtttagcaattaaaacttttgtcagg
cgtgaaggggatggtgtgattcgtgaagctatcctgcgtgaattaaaacgcggtggacaa
gtctatttcttacacaatgaagttgaaaccattagaaacaggcgtcaagcactagaaaaa
ttaattccagaagctcgggttggagttgctcacgggcaaatgcatgagagaaatctagag
caagtcatgcatgattttgtcgccaaacgctgtaatgttttactctgttcgaccattatt
gaaacaggtattgatgtcccatcggccaacaccatcatcatgcaccgtgccgataaattt
ggtttggcgcagttacatcaattacgtggtcgtgtcggaagatctcaccaccaagcctat
gcctatttacttgttccagatcctgagggtctaaccaaacaagccaaattacgcctagat
gccattgtctcgatggaggagcttggatctggtttttatttggctatgcatgatcttgaa
attaggggtgccggtgaggttttaggtgataaacaatcaggcgatatccatgaaattggc
ttccagctttatacagaaatgctcaacaaagcaatttctgaattaaaaaaaggtaaggaa
cctgatttattaagtccaatgcatgccattacagatatttcattaggctgtccagcccta
ttaccaaatgcatattgccccgatgttcatgaacgactatccttgtataaacggctatct
agcgctaatattcatgaggatattgacgatatccactcagaaatcatcgatcgctttggt
gaccttcctgaatctgctaaaactcttttagataatcaccgcctacgattgcaaatggaa
aaattggggattaaaaaaattgaggcttctgctgaggccattaaaattcaatttattcct
aagccaaatattgattcgatgaagattattcagctgattcaaaaagatcgatttgtccaa
ttatccggaccagatcgactacgaatttccccaaacccggcgaatggttttcaattacta
gagcagcgtacctttgccttaaaaaaactgctctcttacctttcctaa
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