Polynucleobacter sp. SHI8: PSHI8_19790
Help
Entry
PSHI8_19790 CDS
T10387
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
poln Polynucleobacter sp. SHI8
Pathway
poln03030
DNA replication
poln03410
Base excision repair
poln03420
Nucleotide excision repair
poln03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
poln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSHI8_19790 (polA)
03410 Base excision repair
PSHI8_19790 (polA)
03420 Nucleotide excision repair
PSHI8_19790 (polA)
03440 Homologous recombination
PSHI8_19790 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poln03032
]
PSHI8_19790 (polA)
03400 DNA repair and recombination proteins [BR:
poln03400
]
PSHI8_19790 (polA)
Enzymes [BR:
poln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSHI8_19790 (polA)
DNA replication proteins [BR:
poln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSHI8_19790 (polA)
DNA repair and recombination proteins [BR:
poln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PSHI8_19790 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSHI8_19790 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
RNase_H_2
Spuma_A9PTase
Motif
Other DBs
NCBI-ProteinID:
BDW14343
LinkDB
All DBs
Position
complement(2016610..2019279)
Genome browser
AA seq
889 aa
AA seq
DB search
MPDLRNPKGEPTGAIYGMINMLRRLRTELPTSHIACVFDAKGPTFRDEWYPQYKANRSPM
PEDLVKQIEPIHAVVKALGWPVIMVSGVEADDVIGTLAKKATAVGWKTVISTGDKDLAQL
VDESVTLINTMTNEKLDIQGVIDKFGIAPHLIVDYLTIIGDTVDNVPGVPKAGPKTAVKW
LTEFGDLDSVIAQSDQIKGVVGENLRSSLEWLEQAKRLLTVKVDCELDEHLNDLSELQVQ
PENHEELKQLFIRYGFKTWLKEYEPNNQGFEQESAGSSQQNQLSFPSQPVITSYESVTSK
EQLTVWLDKIKSASLTCVDTETTGLDPMRSQLVGISLSVEAGKACYIPLKHMTNEDQLDR
EETLETLRPWLEDPQAPKLGQNLKFDWHILANHGITLRGIVHDTLLQSYVYESHRSHDMD
SLAQRHLGVKTITFEEVCGKGASQIGFDQVDIATATQYAAEDADITLRLHQHLWPMIESD
QPLCYVYQAIEIPTMLVLARMERNGILIDSAKLAQQGQVIGLRLLELEKEIHTLAGQPFN
IQSPKQIGEILFQVKNLPIIKKTPGGAPSTDEEVLQKLSENYPLPARILDYRSLAKLQST
YVEKLPRMADSKTGRVHTNYAQAVAATGRLASNEPNLQNIPVRTEEGRKIREAFIARPGW
QLISADYSQIELRIMAHIAQDANLLEAFAQGRDIHQATAAEIFGVPLEGVTPEQRRYAKV
INFGLIYGMSAFGLASNLGIERSAAQTYIDTYFGRYPGVAKYMADTRVLAKEKGYVETIF
GRRLWLPEINSSNGMRRQGAERAAINAPMQGTAADLIKLSMIAVQSWLEAQNLQTQMLLQ
VHDELVLEVPPAELELVKMNLRNLMTQVATLRVPLEVGIGVGTNWEEAH
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatttgcgcaatcccaaaggagagccaacaggtgccatttatggcatgattaat
atgttacgccgattacgtactgagttaccaacttctcatatagcttgtgtttttgatgcc
aagggccctacatttagagatgaatggtaccctcaatataaagctaatcgttcgccaatg
ccagaggatttggttaagcaaattgagcctattcatgcagttgtaaaagctttgggttgg
cctgtaattatggtgtcaggtgtcgaagctgatgacgtcattggaactttggcgaaaaag
gccacagccgtgggttggaaaacagtgatttctacgggagacaaagatctcgcgcaatta
gtcgatgagtcagtcacgttgatcaataccatgactaacgaaaaactagatatacaaggc
gtgattgataaatttggcattgcgccacacttaatcgtcgattatctaacgattattggg
gacactgtggataatgttccaggcgttcccaaagcgggccctaagactgccgtgaaatgg
ttgactgagtttggtgatttagatagcgtgattgcacagtctgaccaaattaagggcgtc
gttggtgaaaatctcaggagttctcttgaatggttagagcaagccaagcgcttactgact
gtgaaagtagattgtgaactggatgagcacttaaatgatctttcagaattacaagttcaa
ccagaaaaccatgaggaattaaagcaattatttattcgttatggatttaaaacatggtta
aaagaatacgaaccaaataatcaaggttttgagcaagaaagtgcgggaagttctcagcaa
aatcaattatcttttccttctcaaccagttattacaagttatgaatcggttaccagtaaa
gagcaactgactgtttggcttgataaaataaaatctgcttctttaacttgcgtcgatacg
gaaacgactggattagatcctatgcgttctcaattagtagggatatctttatcagttgag
gcgggaaaggcatgctacataccactcaagcatatgacgaatgaagatcagttggatcgc
gaagagacacttgaaactttacgtccctggttggaggatcctcaagcacctaaactaggc
caaaacctcaaatttgattggcatatattggccaatcatggaattacgcttcgcggaatt
gtgcatgacaccttattacaatcgtatgtgtatgaatcacatcgctctcatgatatggat
agtttggcgcaacgtcatttaggggtgaagacaatcacatttgaagaggtttgcggcaaa
ggagcgtcacagattgggtttgatcaggtcgatatcgctaccgcaacgcaatatgccgca
gaggatgccgatattacgttacgactccatcaacatttatggcccatgatagagtcagat
caaccattatgttatgtctatcaagccattgaaataccaacgatgttggtccttgcacgt
atggagcgtaatggcattttgattgattctgcaaaattagcccaacaaggacaggtcatc
ggcctgcgactattggagttagaaaaagaaatccatactttggcgggacaaccttttaat
attcaatcgccaaaacaaattggtgaaattctctttcaagttaaaaatttacccattatt
aaaaaaactcctggcggggcaccctctacagatgaagaagtattgcaaaaattatcagag
aattatcctttgcccgcgcggattttggattatcgatcgttagcaaaattacaatcaact
tatgttgaaaaattaccaagaatggctgacagtaaaacgggtagagtccacactaattat
gctcaagcagttgcagcgacaggtcgattagcctctaatgaacctaacttacagaatatt
ccagtacgtactgaagagggtagaaaaattagagaagcatttattgctagacctggatgg
cagttgatttctgcagattactctcaaattgaattaaggatcatggcgcatattgcccaa
gatgctaatttactggaagcttttgcgcaggggcgagatatccaccaggcaaccgcagct
gagatttttggcgttccgcttgagggggtgacccctgagcagcgacgttatgccaaagtt
attaattttggcttaatttatggcatgagtgcttttggtttagctagcaatttgggaatt
gagcgttccgcagctcaaacgtatattgacacctattttgggcgttatcccggagttgct
aagtacatggctgatacccgtgttttagcgaaagaaaaaggctatgttgaaaccattttt
ggaagaagattatggctccctgaaattaatagctctaatggtatgagacgccaaggagct
gaacgtgctgcgattaatgctcctatgcagggcactgctgcagatttaataaagctctct
atgattgcagtccaatcctggctagaagcccaaaacttacaaacgcaaatgctcttacag
gttcacgatgaattggttctagaggttccgccagccgagctagagctcgttaaaatgaat
cttagaaacttaatgacacaagtagcaactttaagagttcctcttgaagttggaatcggt
gttggcaccaactgggaagaggcgcactag
DBGET
integrated database retrieval system
