Polaribacter sp. Q13: JOP69_09350
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Entry
JOP69_09350 CDS
T10394
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
polq Polaribacter sp. Q13
Pathway
polq03030
DNA replication
polq03430
Mismatch repair
polq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
polq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JOP69_09350
03430 Mismatch repair
JOP69_09350
03440 Homologous recombination
JOP69_09350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
polq03032
]
JOP69_09350
03400 DNA repair and recombination proteins [BR:
polq03400
]
JOP69_09350
Enzymes [BR:
polq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JOP69_09350
DNA replication proteins [BR:
polq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JOP69_09350
DNA repair and recombination proteins [BR:
polq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JOP69_09350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
GIY_YIG_2
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
QVY67447
LinkDB
All DBs
Position
2209141..2210517
Genome browser
AA seq
458 aa
AA seq
DB search
MLYTVVDIETTGNGYKGSKITEISILVFDGKVIVDEFTTLVNPEQNIPAFITNLTGITNA
MVRNAPKFYEIAKKVAEITEDTIFVAHNVNFDYNIIHEEFKNLGFSFKRKKLCTVRLSRK
IIPGLNSYSLGNICTIENIPIVGRHRAKGDAEATTELFRRLIERDDNFTINSFLNPKSRQ
ATLPPLLDKKVVDNLPETFGVYYFKNIDKEVIYVGKANNIKQRVISHFYDKKKKEQTMCM
ETADISYTKTGSELLALLHESAEIKQIYPKFNRTQRRSGEAIGLFSYEDQKGIMHLAYNR
LKLVPNPMMKYYTVAEARNHLELLCKEYVLCPKYCHLQTNVASCFHYQLKECKGICCDKE
AVVDYNKRVKEAIKSVGIGAENIVIKETGRTENEVGFALILDGIYQGFGYVDLQQSEQLE
NPEDYQFFVEPKKDNRDIQRIIASYLKKQSTDNNDITK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
ttgttatacacagtagtagacatagaaaccacaggaaatggatataaaggttctaaaata
accgaaatatccattttagtatttgacggaaaagtgattgttgatgagtttactactttg
gtaaatccagagcaaaacattcccgcttttattaccaatcttacaggcattacaaatgca
atggtaagaaatgctcctaagttttatgaaattgcaaaaaaggtagcagaaattacggaa
gacaccatttttgtagcacacaatgtcaacttcgattataatattattcacgaagaattt
aaaaatttaggattctcttttaaacgaaaaaaactctgtaccgttcgtttatcaagaaag
ataattccgggtttaaattcttatagtctaggtaatatttgtactattgaaaatattcct
attgttggcagacacagagcaaaaggagatgcagaagcaaccacagaattatttagaaga
ttaatagaaagagatgataattttaccatcaattcttttttaaacccaaaatctagacaa
gccaccttaccgcctcttttagacaaaaaagttgtcgataatttacccgaaacttttggc
gtttactactttaaaaacattgataaagaagttatttatgtgggtaaagccaataatata
aagcaacgtgtcatcagtcatttttatgacaaaaagaaaaaagagcaaaccatgtgtatg
gaaactgccgatatttcttatacaaaaacaggtagcgaattgctggctcttttacatgaa
tctgcagaaataaaacaaatttaccctaaatttaatagaacacaaagacggtctggagaa
gctattggtttattttcttacgaagaccaaaaaggcattatgcatttagcttacaatcgg
ttaaaattggtacccaatccaatgatgaaatattacactgttgccgaagctagaaaccac
ttagaacttctttgcaaagaatatgtattatgtccaaaatattgccacctgcaaaccaat
gttgcgagttgtttccattatcaacttaaagaatgtaaaggtatttgttgtgataaagaa
gccgtagttgattataataaacgtgtaaaagaagctattaaatctgttggcattggcgca
gaaaacatagttattaaagaaactggtagaacggagaatgaagttggttttgccttaatt
ttagatggaatttatcaaggttttggttatgtagatttgcagcaatctgaacaattagaa
aacccagaagattaccagttttttgtagaacctaaaaaagacaatagagatattcagaga
ataattgcttcttatttaaaaaaacaaagtactgataataatgatattactaaataa
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