Polaribacter sp. Q13: JOP69_11430
Help
Entry
JOP69_11430 CDS
T10394
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
polq Polaribacter sp. Q13
Pathway
polq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
polq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JOP69_11430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
polq03019
]
JOP69_11430
Enzymes [BR:
polq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JOP69_11430
Messenger RNA biogenesis [BR:
polq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JOP69_11430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QVY64379
LinkDB
All DBs
Position
complement(2758497..2759816)
Genome browser
AA seq
439 aa
AA seq
DB search
MTFKDLGLSAALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVL
QHLAETKHPKYRPLRALVLTPTRELAAQVYDNVREYSKYVNIKSAVVFGGVNAKPQIATL
RSGVDILVATPGRLLDLHSQKAVSFNRIDVLILDEADRMLDMGFARDLNKLISFMPAKRQ
NLMFSATFSADIKKLASGILNNPVSVEAEPQNSTAKKVTHNVYKVDKGQKTEFTIKLIKD
GNWNQVLIFTRTKHGANKLTEKLIKAGISAAAIHGNKSQGARTKALRTFKDNTIKALVAT
DIAARGLDIPLLPHVINFELPNVPEDYVHRIGRTGRAGAAGEAISLVCSEETEYQNEIEK
LLKEKLNTSIVEGFEPTDTAAPKRAASQSKGSFNKKNKGGNSGSSQGDKPKRKPHFKGNK
PAGSTSGRGRTGAPKKKRF
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagatttaggtttatccgctgcattagtaaaagcagttgaagaaaaagga
tataccaaaccatcaccaatacaagaaaaagcaattccacatattttagaaggtaaagac
attttagcttctgcacaaacaggaactgggaaaacagctggttttacattgccagtatta
caacatttagctgaaacaaagcacccaaaatataggcctttaagagcactagtgttaacg
ccaacaagagaattggctgcgcaagtttatgacaatgtaagagagtatagtaaatatgta
aacataaaatctgccgtagtttttggtggagttaatgcaaaaccacagattgcaacgtta
agaagtggtgtagatattttagtagcaacacctggtagattattagatttacacagtcag
aaagcagtttcttttaacagaattgatgttttaattcttgatgaagcagacagaatgtta
gacatgggttttgctagagatttaaataaactgattagttttatgccagcaaagcgtcag
aatttgatgttttctgcaactttttctgctgatattaaaaaattagcttctggtatttta
aataatcctgtttctgtagaagcagaaccacagaattctacagctaaaaaagtaactcat
aatgtttataaagttgataaaggccaaaaaacagagtttacgattaagttgataaaagac
ggaaactggaatcaggttttaatctttacaagaacaaaacatggtgctaataaattaaca
gagaaattgataaaagcaggaatatctgcagcagcaattcacggaaataaaagtcagggt
gcaagaacaaaagcattaagaacttttaaagacaataccattaaagcattggttgcaaca
gatattgcagcacgtggtttagatattcctttattaccacacgttattaactttgaatta
ccaaatgtaccagaagattatgtacatagaattggtagaacaggtagagcaggagcagcg
ggagaagcaatttctttagtttgtagtgaagagactgagtaccaaaacgaaattgaaaaa
ttactaaaagagaaattaaacacttctattgtagaaggttttgagcctacagatacggca
gctcctaaaagagcagcttcgcaaagtaaaggttcttttaataagaaaaataaaggtgga
aattctggatcttctcaaggagataaaccaaaaagaaaacctcattttaaaggaaataaa
cccgcaggttctacttctggtagaggaagaacgggagcgcctaaaaagaaacgtttttag
DBGET
integrated database retrieval system
