Polynucleobacter sp. TUM22923: TUM22923_00430
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Entry
TUM22923_00430 CDS
T10645
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
polt Polynucleobacter sp. TUM22923
Pathway
polt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
polt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TUM22923_00430 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
polt03021
]
TUM22923_00430 (rpoC)
03400 DNA repair and recombination proteins [BR:
polt03400
]
TUM22923_00430 (rpoC)
Enzymes [BR:
polt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TUM22923_00430 (rpoC)
Transcription machinery [BR:
polt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TUM22923_00430 (rpoC)
DNA repair and recombination proteins [BR:
polt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TUM22923_00430 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
BDX20722
LinkDB
All DBs
Position
47358..51620
Genome browser
AA seq
1420 aa
AA seq
DB search
MKALLDLFKQTQGDEQFDVIKIGLASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPTKDYECLCGKYKRLKFRGVICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDAGMTPEGVMKRGQIMSEDEFIAKTEEYGDGAF
TAIMGAEGIRDLLRGIDIDREVEVIRADLKATGSDAKIKKYAKRLKVLEAFQTSGIKPDW
MIMEVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIVRNEK
RMLQEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKSGRFRQNLLGKRVDYSGRSVIV
VGPTLKLHQCGLPKLMALELFKPFIFNKLETLGIATTIKAAKKEVESQTPIVWDILEEVI
REHPIMLNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEA
QMEARTLMLASNNVLFPANGEPSIVPSQDVVLGLYYATRDKINGKGEGMVFANITEVVRA
YEAGEVELASRVAVRITEHEIVDKKAEGEARFAEKTKIYQTSVGRAILSEILPKGMTFEE
INKPLKKKEISRLINTSFRKCGLRETVIFADRLLQSGFRLATNAGISVAIDDMLIPTSKE
RIINEASTKVKEYDKQFMSGLVTNQERYNNVVDIWGAAGDQVGKAMMDELSHVDVLDRNG
KTVRQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLCDVTQDLVVIEDDCGATSGVKMKALVEGGEI
IEALRDRILGRVCIGDVVHPDTQAVIVAHDTLLDEDHVDEIVALGIDEVTVRTVLSCLTR
FGLCAKCYGRDLGRGGMVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRALVASNIE
AKSNGALKFSGTMRVVKNAKGEQIVISRSGEVLIVDDNGRERERHKVPYGATLAVKEDAT
VKAGASLATWDPLTRPIISEYAGIARFDNVEEGVTVAKQVDEVTGLSTLVVIDGKRRSAA
SKGVRPMINLVDDKGGEVMIAGTDHPVNIGLQVGALITVKDGQKVEVGEVLARIPIESQK
TRDITGGLPRVAELFEARSPKDAAVLAKVTGTVSFGKETKGKQRLVITDMDGESNEFLIP
KEKQVLVHDGQVVNKGEMIVEGPADPHDILTLRGIEELAIYIVDEVQDVYRLQGVKINDK
HIEVIVRQMLRRVQITDGGDTAYITGEQVERSKLYDANDLVIAAGKRPAQFENVLLGITK
ASLSTDSFISAASFQETTRVLTEAAIMGKTDTLRGLKENVIIGRLIPAGTGLAYRRARKV
REQFERDRAQMIAAEEEAIADMPVEIEAEVIAPAAEADPS
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgatttatttaagcaaacgcagggcgacgaacaatttgacgtaatt
aaaattggtctcgcttctcctgaaaaaattcgctcatggtcttttggcgaagttcgcaaa
ccagaaaccattaactatcggacctttaagcccgagcgtgatggtctgttttgtgccaaa
atttttggtccaaccaaagactacgagtgcttatgcggtaagtacaagcgcttaaagttc
cgtggcgtaatttgtgaaaagtgcggcgtagaggtaactctcgctaaggtacgccgtgag
cgtatgggccacattgagttggcagcgccagttgctcatatttggttcttaaagtcattg
ccatcccgtttgggcatggttcttgatatgaccttgcgggatattgagcgcgttctttat
tttgaagcctatgtagttgtagatgctggcatgacccctgagggtgtaatgaagcgtggg
cagatcatgtctgaagacgagttcattgccaagactgaagagtacggtgatggcgcattt
actgccatcatgggcgcagaaggtattcgggatctattgcgcggtattgatatagatcgt
gaagtagaagtcattcgcgcagatctaaaggcgactggtagtgatgccaagattaaaaaa
tatgccaagcgcttaaaagtgctagaggcattccagacttcaggaattaagcctgactgg
atgatcatggaagtgttgccagtattgccaccagaactacgtccgttagtgccattggat
ggcggtcgctttgctacttccgatctaaacgatctttatcgtcgtgtgatcaaccgcaac
aatcgcttaaagcgcttattagagttgcgtgcaccagagattattgttcgtaacgaaaaa
cgcatgctgcaagaagcggttgactcattgcttgacaatggtcgtcgcggtaaggcaatg
actggcgcgaataagcgtcctctcaaatctttagcagaaatgattaaaggtaagagtggt
cgtttccgtcaaaacttgctaggtaagcgcgttgactactcaggtcgttcagtcatcgta
gttggtcctacgctcaagttacatcagtgcggcttgccaaaattaatggctttggagtta
ttcaaaccatttatttttaacaagcttgagactttaggaattgcaactacgattaaggct
gcaaagaaagaagttgaaagtcagacgccaatcgtttgggatattctcgaagaagtgatt
cgtgagcatccaattatgctgaaccgtgcgccaaccctacaccgtcttggcattcaggct
ttcgagcctatgctgatcgaaggcaaggcaattcaactgcacccattagtctgcgcggca
tttaacgcggactttgacggcgaccaaatggcggttcacgttccattgtcattggaagcg
cagatggaagcgcgtacattgatgttggcctcgaataacgtactgttcccagcgaatggt
gagccatcgattgttccttcacaggacgtggtgttgggcttgtactacgctactcgtgac
aagatcaacggtaagggcgaaggcatggttttcgctaacattaccgaggttgtgcgcgca
tacgaagccggtgaagtggaattagcgtcacgcgttgcagttcgtattaccgagcatgaa
atcgtggacaagaaggcagagggcgaggcccgctttgctgaaaagaccaagatttatcaa
acgtcagttggccgtgccatcctgtcagagattttgcctaagggtatgacttttgaggaa
atcaataagccgctgaagaaaaaagaaatttctcgcttaatcaacacttcgttccgtaag
tgcggcctacgtgagacagttatttttgccgatcgacttttgcaatccggtttccgtttg
gcaactaatgcgggtatttcggttgcaatcgacgatatgttgattccaacttcaaaagaa
cgcatcatcaatgaagcgtctaccaaagtaaaagagtatgacaagcagtttatgtcaggc
cttgtaaccaaccaagagcgttataacaacgtggtagatatttggggtgctgctggtgat
caggttggcaaagcgatgatggatgagttgtcacacgttgacgttctcgatcgtaacggc
aaaacagttcgtcaagaatctttcaattccatctacatgatggcggattctggtgcacgt
ggatctgcagcgcagattcgtcagttagccggtatgcgtggcttgatggccaagcctgat
ggctcgattattgaaacgccaattacagcaaacttccgtgaaggcttgaacgttttacag
tacttcatttctacccacggtgcacgtaaaggcctggctgatactgcattgaaaacagcg
aactctggctacttgacccgtcgtttatgtgacgttacacaagacctcgtcgtgattgag
gatgactgtggcgcaacaagcggcgtgaagatgaaggccttagttgagggcggtgaaatt
atcgaagcattacgcgatcgtattttgggtcgtgtctgtattggtgatgttgttcaccct
gatacccaggcagttatcgttgcgcatgacacattattggatgaagaccatgttgatgaa
atcgttgccttaggcatcgatgaagtgacagtgcgcacagtattgtcttgcttaactcgc
tttggtttgtgcgccaagtgctacggtcgtgaccttggtcgtggcggtatggtgaacgtt
ggtgaagcggttggtgtgatcgccgcccagtccattggtgagccaggcactcagttaaca
atgcgtaccttccacattggtggtgcagcttcacgtgcattagtggcaagcaatattgaa
gccaagtctaatggtgcattgaaattctctggcacgatgcgcgttgttaaaaatgcaaaa
ggtgagcagatcgttatttcacgttctggcgaagtcttaattgttgatgacaacggccgt
gagcgtgagcgtcataaggtgccttatggtgcaactctggctgtcaaagaagatgcaaca
gtaaaggctggcgcaagcttagccacttgggatccattaacccgtcctattatttctgag
tacgccggtattgctcgcttcgataacgtagaagaaggtgttactgtcgctaaacaggtt
gacgaggtaactggcctctccactttggtggtgattgacggtaagcgtcgtagtgctgca
agcaaaggcgttcgtccaatgatcaacttagttgatgacaagggcggagaagtaatgatt
gcgggtactgatcatccagtgaatatcgggctgcaggtgggcgcgttgattactgttaag
gatggtcaaaaggttgaggttggcgaagtattggcgcgtattccaattgaatcacagaag
actcgcgacattaccggtggcctaccgcgcgttgctgaattattcgaagctcgctcacca
aaagatgctgctgtattggctaaagtcactggaacagtttccttcggcaaagaaaccaaa
ggtaagcagcgtttagtgattaccgatatggatggtgaatcgaatgaattcttgattcct
aaagagaagcaagtgcttgttcatgacggtcaagttgtgaataagggcgagatgattgtg
gaaggtcctgctgacccacatgacatcttgacactcagaggtatcgaagaattagcaatc
tatattgtcgatgaagttcaagacgtttaccgtttgcaaggcgtaaagattaacgacaag
cacatcgaagtgatcgtgcgtcagatgttgcgtcgtgtgcaaattacggatggcggcgat
acagcctacatcacgggtgagcaagttgagcgttccaaactctatgatgcaaatgattta
gtgatcgctgcaggtaagcgcccagctcagtttgagaatgtattgttgggtattactaaa
gcatccttgtctacagacagctttatttcagcggcttctttccaagaaaccactcgtgta
ttgaccgaagccgccattatgggcaagaccgatacacttcgtggcctcaaggaaaacgtc
attattggtcgtttgatccctgctggtactggcttggcttatcgccgtgcacgcaaggtc
agagagcaattcgagcgtgatcgcgctcaaatgattgctgctgaagaagaggcaatagcc
gatatgcctgtagaaatagaggcagaggtaattgctcctgctgcagaggcggatccaagc
taa
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