Polynucleobacter sp. TUM22923: TUM22923_06310
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Entry
TUM22923_06310 CDS
T10645
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
polt Polynucleobacter sp. TUM22923
Pathway
polt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
polt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TUM22923_06310 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
polt03019
]
TUM22923_06310 (pnp)
03016 Transfer RNA biogenesis [BR:
polt03016
]
TUM22923_06310 (pnp)
Enzymes [BR:
polt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TUM22923_06310 (pnp)
Messenger RNA biogenesis [BR:
polt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TUM22923_06310 (pnp)
Transfer RNA biogenesis [BR:
polt03016
]
Prokaryotic type
tRNA degradation factors
TUM22923_06310 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
S1_RRP5
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
BDX21310
LinkDB
All DBs
Position
639095..641260
Genome browser
AA seq
721 aa
AA seq
DB search
MTMFNKAVKTFQWGNHQVTMETGEIARQSGGAVIVNIDDTVVMGTVVASKSAKPGQSFFP
LTVDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFLNEVQVVIHVL
SINPDVPSDIPALIAASAALAISGIPFAGPVGAARVGYANGQYLLNPTRPEQATSEMDLI
VAGTQAAVLMVESEANQLSEEIMLGAVVYGHDQMQTAINAINELVSEAGKPEWDWTAAPK
DEPFIAKVTALAEGPLREAYQIRQKGARSDKLKETTKTVLAQLAQEGDVDAVAVNDILFE
IEGKIVRSQILNGEPRIDGRDTRTVRPIEIRNGVLPRTHGSALFTRGETQALVVATLGTA
RDEQIIDALEGEYRDRFMFHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAE
DFAYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPIKAHVAGVAMGLILDGNRFAVLT
DILGDEDHLGDMDFKVAGTANGITALQMDIKVQGITKEIMQVALAQAKEGRLHILSKMQE
AMGSVRTELSEHAPRMVSFKIHPDKIREVIGKGGATIQALTKETGCSIDIKDDGTVTIAS
TSAEGMAEAKARIEGITAEAEVGKIYEGPVVKLLEFGALINILPGKDGLLHISEISNERV
KEVKDYLQEGQIVRVKLLAADERGRLRLSLKAAMAEEGGTIAPLAGADEAAQANPASDET
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgtttaataaagcagtaaaaacctttcaatggggcaatcaccaggtaacaatg
gaaacaggtgagattgctcgtcaatccggtggcgctgtcatcgttaatatcgacgacaca
gtcgtcatgggtacagtggtagcttccaagtcagccaagcctggccagtcttttttcccg
ttgactgtggattacctagaaaaaacatatgccgccggaaaaattcctggtggctttttc
cgtcgtgaaggtcgtccatccgaaggtgagacattaatctcccgcttgatcgatcgccca
ttgcgtcctttatttccagaaggcttcttaaatgaagttcaggttgttattcacgtttta
tcgatcaaccctgatgtaccttcagatattcctgctttgattgctgcttctgctgcgtta
gctatttctggtattccgtttgctggccccgttggtgcggcacgcgtaggttacgcaaat
ggccaatacctgttgaacccaacccgtcccgagcaagccactagtgagatggacttgatc
gttgctggtacgcaagctgcagtattaatggtggaatcagaagccaatcagttatcagaa
gaaattatgttgggcgcggtggtgtatggccatgaccaaatgcagacagccattaacgct
atcaatgaattggtaagcgaagctggcaagccagagtgggattggactgcagcccctaaa
gatgagccatttattgctaaagttactgctttggctgaaggcccattacgtgaggcatat
cagattcgtcaaaagggcgcacgctcagacaagctgaaagaaactacgaagactgtatta
gctcagttggcccaagagggtgatgttgatgcggttgctgtgaacgatattctttttgaa
atcgaaggcaagattgttcgtagccagattttaaatggtgagccacgcatcgacggtcgt
gatacacgcactgttcgcccaatcgaaattcgtaatggtgtattgccacgtacgcacggc
tctgcattatttacccgtggtgaaactcaagctttggtagttgccaccttaggtactgca
cgtgatgagcaaattattgatgcactcgaaggtgagtaccgtgatcgctttatgttccac
tacaacatgcctccgttcgctactggtgaaacaggtcgtgtaggtagtccaaagcgccgt
gaaattggtcatggccgtttagctaagcgcgcattgattccagtattgccaagtgcagaa
gattttgcttacagtattcgtgtggtatccgagatcactgaatcgaatggctcttcatca
atggcttctgtttgtggcggttgtttagcaatgatggatgctggtgttccaatcaaggcg
cacgttgctggtgttgcaatgggtttgattttggatggcaatcgttttgctgtattgacc
gatatcttaggtgacgaagatcacttaggtgatatggactttaaagtagccggcacagct
aatggtattaccgctttgcaaatggacattaaagttcaaggtatcactaaagaaatcatg
caagttgcgttagcgcaggctaaagaaggccgcttacatattctgagcaagatgcaagaa
gcaatgggttcagttcgtacagaattgtctgagcatgctccgcgtatggtgtcgttcaag
attcatccagacaaaattcgtgaagtcatcggtaagggcggcgcaacaattcaggcctta
actaaagaaacgggttgcagcattgacatcaaagatgacggcacagtaacgattgcttca
accagtgctgaaggcatggctgaagcgaaagcccgcattgaaggcattactgctgaagct
gaagttggcaagatctacgaaggtcctgtagtgaagttgcttgaattcggtgcgttgatt
aatattcttccaggtaaagacggtctgttacacatctctgaaatttcaaatgagcgtgta
aaagaagtaaaagactatttacaagaaggtcagattgttcgtgtgaagttgttagctgct
gatgagcgcggtcgtttgcgtttgtctctcaaagcggccatggctgaagagggcggtacg
attgctcctctagctggcgctgatgaagctgcacaagctaacccagcttctgatgaaact
gcctaa
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