Polynucleobacter sp. TUM22923: TUM22923_09380
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Entry
TUM22923_09380 CDS
T10645
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
polt Polynucleobacter sp. TUM22923
Brite
KEGG Orthology (KO) [BR:
polt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
polt03019
]
TUM22923_09380 (hrpA)
Enzymes [BR:
polt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TUM22923_09380 (hrpA)
Messenger RNA biogenesis [BR:
polt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TUM22923_09380 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
HA2_C
AAA_19
AAA_22
AAA_30
NACHT
WHD_HA2
nSTAND3
nSTAND_NTPase5
T2SSE
AAA_25
AAA_23
SRP54
Motif
Other DBs
NCBI-ProteinID:
BDX21617
LinkDB
All DBs
Position
complement(953078..957187)
Genome browser
AA seq
1369 aa
AA seq
DB search
MQEPNHQQKPKSSPVAVPASNTTRSLEIRFPEELPVSGQRQIIKDALTNSQVVIVCGETG
SGKTTQLPKICLDLGRGTINGGRLIGHTQPRRIAATATAKRIAQELGSPIGQDVGYQVRF
ADKTSQGASIKLMTDGILLAETQRDPQLRAYDTLIIDEAHERSLNIDFLLGYLRQLLPKR
PDLKLIITSATIDAKRFSEHFTIAGKAAPVIEVSGRLFPVEQRYEPVEPDVKPDGKKVSK
QAKEIPEAVTEAITQVWREGAAGAGDVLVFLPGEREIRDCAEAIRKDHVLQQRFHPEVLS
LFARQSVAEQERVFNPGNGRRIILTTNVAETSLTVPNIRYVVDSGLARVKRYSYRNKVEQ
LQIESISQAAANQRAGRCGRVSDGICIRLYSEQDYLSRPKFTDPEILRSSLAAVLLRMSS
LRLPRVQEFPFIDKPLGRAIADGVQLLDELGAIAYDENVVGDNSDINNHFKLTAIGKQLA
DLPLDPRIGRMLLAAKEQQALREVTIIASALATQDPRERPLEQAAAADQAHLQFADERSE
FLNFVKLWDWYQDALQHKQSNRQLENLCRSKFLSPRRLREWRDVHGQLHTMLGEKGWKEN
PLPATYEQVHLSLLTGLLGYVAKKEEDEKSQERGSKTGGYIGARGIRPFIWPGSTIGKKA
GAWILAGELQETNRMYARTIAKIEPQWVERVAGHRLIKSLSDPFWDARQGEVMAFERGTL
YGLPIYQGRRVRFESHDPQEARALFISQALVQEEMFGRMDTPALMRETEADARKKYPGSF
EFFWHNRRLIKEIEALEHRSRRPDVLVDDDLLFAFYDSRIPKQVLSRESMKAWLKASSKN
GITQADVEATATNTANTDAHLRLSKADLMRHEAAGITVDRYPKKMLVGGGELALTYHFEP
ASPKDGVTLVVPLTLLNQVDSRRCEWLVPGMCEEKILLLLKSLPQKLRRHCIPLPEFAKS
SLERLLDEKKFGEGDFLDSLITDIRKERGLEIKRTDFRPEALPLHLSMNFRLVDEHGRQL
ELERNLARLRAEHGQTARTAFQAIAQQAVQEEFGITVSDARTVVASTAASASALASVRAI
EQGGYKSWDFGPLPETLEIQKGNRTLFGYPALVDCGESCDLEVFDDLLEARKQHWQGLRR
LFTLANKDTLKALQKQLPGARELGLLFINIGSIERLVEQILHCAIERAFMNDPLPANAEQ
FAERLQAGKPRLALIAQEMAKHALAALQAHADLQKKIAQAKAASLSAFNDIQAQMQGLVF
PQFVADIPYEQLVHLPRYLKAIALRIDKLRANPSRDAQCQKDWESVARPWQKLIQANRGS
SGHGAGEDQVLLDFRWQLEELRVALYAQELKTPTPMSLKRLEKILGSFR
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagagcctaatcaccaacaaaaacccaaatcatcgcctgtggctgtgcctgcttcc
aacactacgcgcagcttagaaattcgattcccggaagagttgccggtatcgggtcagcgt
caaattatcaaagacgcccttactaattcccaggtagtgattgtctgtggagagaccgga
tcaggcaaaaccactcagttgccaaagatttgcctagacctgggcaggggcacaattaac
ggtggacgcctgattgggcatacccagccgcgccgcatagcagctaccgctactgcaaaa
cggattgcccaagagctaggaagccccatcggtcaagatgttggttatcaggtacgcttt
gccgataaaacgagtcaaggcgcctctatcaagctaatgacggatggcatcttgcttgct
gagacccagcgagacccccagctacgtgcttatgacacgctcatcattgatgaggcccat
gagcgcagtctcaatattgacttcttgttgggttatttgaggcagttacttcccaagcgc
cctgatttaaagctcatcattacttccgcaacgattgatgcaaagcgtttttctgagcac
tttacgattgctggcaaggctgcccctgtcattgaggtcagtggacgtcttttccccgta
gagcagcgctatgagcctgtagagcccgatgtaaagcctgatggtaagaaggtatccaag
caagctaaggaaattcctgaagcggttacagaggctattacgcaggtttggagagaaggt
gccgctggagcgggggatgtcttggtatttttacccggagagcgggagattcgggattgt
gccgaggccattagaaaagatcatgtgctccagcaacgttttcatcctgaggtgctgagt
ttgtttgcgcgtcaatctgttgcagaacaggaacgtgtatttaacccgggaaatggacgt
cgcattattttgaccactaatgtggcagagacgtcgctcacagttcccaatattcgttat
gtagttgatagcggcctagcacgagtcaagcgctactcttatcgtaataaggtcgagcag
ctgcaaatagaatccatttcacaagcagctgccaatcaacgcgctggtcgttgtggtcgt
gtatcggatggtatttgcattcggctctatagcgaacaagattacctaagtcgtccaaag
tttaccgatcctgaaattttgcgtagctctctagcagcagtgcttctacgcatgagttcc
ttgcgtctgcctagggtgcaagagtttccctttatcgataaacccctaggtcgcgccatt
gccgatggtgttcagctgctagatgagctgggtgcaattgcgtatgacgaaaacgtcgtc
ggtgataacagcgatattaataatcactttaaattaactgctatcggcaaacaattagcc
gatcttccactagatccccgcattggacgtatgttgctagcggctaaagagcagcaggca
ttacgtgaagtgaccattatcgcttctgccctagcgactcaggatccgcgtgagcgtcct
ttagagcaggcagccgctgctgatcaagcccatttgcagtttgcggatgagcgatccgaa
ttcttaaattttgtaaagctatgggattggtatcaggatgcactccaacataaacagagt
aatcgccagttagagaatttatgccgaagtaagtttttgtctcctagacgattgcgtgaa
tggcgtgatgtccatggtcagttgcacacgatgctcggtgaaaaaggctggaaagaaaat
cctttgccagccacttatgagcaagttcacttatccctattgactggactcttgggctat
gttgccaaaaaagaagaggatgaaaaatcacaagagcgcggaagtaaaacgggtggttac
attggcgcgcggggtattcgtccattcatttggcctgggtcaactattggtaagaaggct
ggcgcttggattttggctggtgagcttcaagaaaccaatcgtatgtatgcccgcacaatt
gccaagattgagccacagtgggtagagcgcgtcgctggccatcgattgattaaatccttg
agtgatcctttttgggatgctcgtcaaggtgaggtgatggcttttgagcgaggaacgctg
tatggactaccgatttatcaaggtcgccgtgtgcgttttgaatctcacgacccccaagag
gcgcgcgcgctatttatcagtcaagccttagttcaggaggaaatgtttggtcgtatggat
actcctgccttaatgagagaaacggaagctgatgccaggaaaaaatatcccggaagcttt
gagttcttttggcataaccgacgattaattaaagagattgaggccctagagcatcgttca
cgccgaccagatgtcttggttgatgacgacctcttgtttgctttttatgattcgagaata
ccgaaacaggtgctgagtcgggagagtatgaaagcatggctaaaggcatccagtaaaaat
gggattacccaagctgatgttgaagcaactgctaccaatactgctaatactgacgcccat
ctacgtttatctaaggccgacttgatgcgtcatgaagcggctggcattacggttgatcgt
tatcccaaaaaaatgcttgtaggcggtggagagctcgctttaacttatcactttgaacca
gctagcccaaaggatggtgtcacgctggtggtgccactgaccctgttaaatcaagtcgat
agtcgccgctgtgaatggcttgttccgggtatgtgtgaagaaaagattttgttgctcctc
aaatcacttccgcaaaaattacgtcgacattgcattccgctccctgagtttgccaagtct
tcattggagcgtttattagatgaaaagaaatttggggaaggtgactttttagatagcctc
attacggatattcgtaaagagcgcggtttagaaattaagcgcacagattttaggccagag
gcattgccattgcatttatccatgaacttccgtttagtagatgagcatggtcgccagctt
gagttggagcgtaacttagcgcgtttgcgtgcagagcatggccagacagcgagaactgcg
tttcaggcgattgctcaacaggcggtccaggaagagtttggtatcactgtatcagacgct
agaacggtagtagcatcaacggcagcttcagcatcagctttagcttcagttagagccatt
gagcagggcggatataaaagttgggattttggtcccttacccgagactctagaaattcaa
aaaggtaaccgcactttatttggttaccctgcactggtcgactgtggtgaatcttgtgat
cttgaggtatttgatgatctgctggaggccagaaagcagcattggcagggtctgcgtcgc
ctttttactttggcaaataaagacactttaaaagcattgcagaaacagcttcctggcgct
cgagagctgggcttgttatttattaatattggctcaatagagcgccttgttgaacaaata
ctccactgtgcaatagagcgggcatttatgaatgatcctttgccagctaatgcagaacaa
tttgcagagcgccttcaagcgggcaaacctaggctggctttaatcgctcaggagatggca
aagcatgcattggctgcattgcaggcccatgctgatctacaaaaaaagatagcgcaagca
aaagcagcttccctgagcgcttttaatgatattcaagcgcagatgcaaggtttggtcttc
ccgcagtttgtagccgacattccctacgagcagttagtgcatctaccaagatacctaaaa
gcgattgcattgagaattgataagcttcgggctaacccaagcagggatgcacagtgtcaa
aaggattgggagtcagtggctagaccttggcaaaaactcattcaggctaatcgcggttca
tctgggcatggagcgggtgaagatcaggttttgcttgattttcggtggcagctagaagaa
ttaagggttgctttatatgcccaggaattaaaaacacccaccccaatgtctttaaaacgc
ctggaaaagatcctcggcagtttccgctag
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