Polynucleobacter sp. TUM22923: TUM22923_17460
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Entry
TUM22923_17460 CDS
T10645
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
polt Polynucleobacter sp. TUM22923
Pathway
polt00300
Lysine biosynthesis
polt00470
D-Amino acid metabolism
polt01100
Metabolic pathways
polt01110
Biosynthesis of secondary metabolites
polt01120
Microbial metabolism in diverse environments
polt01230
Biosynthesis of amino acids
Module
polt_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
polt00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
TUM22923_17460 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
TUM22923_17460 (dapF)
Enzymes [BR:
polt01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
TUM22923_17460 (dapF)
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Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BDX22425
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Position
1756893..1757747
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AA seq
284 aa
AA seq
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MHGAGNDFIVLNGIDQDLSDIRPEQWQRLAHRQFGIGADQILLVEKSTRSDADFRYRIFN
ADGGEVEQCGNGSRCFVRFIQDQGLSNKNPLRVEVAHTILTLRSHSDGQVEVNMGAPIFE
HSQIPFDAKGLSSLQEFHETLFALHLKKPAPHDSWIGVVSMGNPHAVQVVGDINSAPVLE
EGPSIESHVAFPKRVNAAYMQILNRNEIQLRVYERGAGETLACGTGACAAVVSGIRRGLL
HSPVQVHTRGGDLTIAWEGIINDIIQPVIMTGPAVTVFEGETTI
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgcatggtgccggcaatgactttattgtgctcaatggcatcgatcaagatctgagtgat
atccgtcccgagcaatggcaaagactggctcaccgtcaatttggtattggtgcagatcaa
attttattggttgaaaaatctacgcgctcggatgctgattttcgttatcgaattttcaat
gctgatggtggagaagtagagcaatgcggcaacggctcacgttgctttgtacgctttatt
caagatcaaggactttcaaataaaaatcctctgcgcgttgaagtcgctcacaccattctt
actttgagatcccattcagatggccaggttgaggtcaatatgggagcgcctatttttgag
catagccagattccgtttgatgcaaaaggcctctccagcctgcaagaatttcatgaaacg
ctctttgcgcttcaccttaagaagcctgccccacacgatagttggattggcgttgtgtct
atgggaaacccgcatgcagttcaggtagtgggagatattaatagcgcacctgttttagag
gaagggccctctattgagagtcacgtcgcctttccgaaaagagtgaatgcagcttatatg
cagattctcaatcgcaatgaaattcaattgcgcgtctatgagcgtggcgccggcgaaacc
cttgcctgtggtacaggcgcatgtgccgctgtagtctccggtatacgccgaggcttactg
cactcgcccgttcaagtgcacacgcgtgggggcgacctcacgatagcttgggaaggcatc
atcaatgacatcattcagccagtgatcatgactgggcccgcagtgactgtatttgagggt
gagacgacgatctag
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