Polynucleobacter sp. SHI2: PSHI2_00030
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Entry
PSHI2_00030 CDS
T10386
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
poly Polynucleobacter sp. SHI2
Brite
Enzymes [BR:
poly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
PSHI2_00030 (gyrB)
DNA replication proteins [BR:
poly03032
]
Prokaryotic type
DNA Topoisomerases
PSHI2_00030 (gyrB)
DNA repair and recombination proteins [BR:
poly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PSHI2_00030 (gyrB)
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Gene cluster
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Other DBs
NCBI-ProteinID:
BDW09921
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Position
2960..5458
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AA seq
832 aa
AA seq
DB search
MTKENQSVTDLYSASSIQILEGLEAVRKRPGMYIGDTSDGSGLHHLVFEVLDNSIDEALA
GHCSEITVTIHTDNSISIIDNGRGIPTGIKYDDKHDPKRSAAEIVMTELHAGGKFDQNSY
KVSGGLHGVGVSCVNALSKWLRLTVRRDGKTHFLEFAKGVVQNRTIIEENGLIISPIPVI
GTTDKRGTEVHFSADEEIFGKVEFHYEILVKRIRELSFLNNGVHIRVIDERTGKEEDFAF
SGGVKGFVEYINKAKSVLHQNIFHAVGEKAAEVGGMITSEVAMQWNDGYTEQVLCFTNNI
PQRDGGTHLTGLRAAMTRVINKYIDENDLAKKAKVEVTGDDMREGLTCVLSVKVPEPKFS
SQTKDKLVSSEVRGPIEEVVSSTLTAFLQENPSDAKIICGKIIEAARGREAARKARDMTR
RKGVLDGLGLPGKLADCQEKNPANSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNV
EKARFDKMLASQEVVTLITALGTGIGVEEYNIEKLRYHRIIIMTDADVDGSHIRTLLLTF
FYRQMPELIQRGHIYIAQPPLYKVKHGKTEQYIKDDIALTSYLIEIALSSAQIINANNDI
FEGDNLKQLTTLYYLTQTVIDRLSRTMDADVLRVISEGVDIRLDSLDDASASAKELSAAL
QKRLGDNSQSLEIIPQLEERTERYRLLVSRRVHGNLKLSFINSDFIHGSDYASIKAFSQS
EAGKIGVGSKVKRGDPDRSKEFAVGNFQEAVSWLISEAERTVSRQRYKGLGEMNPSQLWE
TTMDTSTRTLLKVQIEDAIYADQTFMTLMGDDVEPRRAFIETNALIAKNIDV
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaaaatcaatctgtaacagatttatatagtgcatcctcgattcaaatatta
gaaggtttagaagctgtaagaaaacgccctggtatgtatattggggatacttcagatggg
agtggattacaccatcttgtttttgaagttttggataactcgattgacgaagccttggca
ggtcattgttcagaaattacagtgactattcacacagataattcaatttcgataattgat
aacggtcgtggaataccaaccggtattaagtatgacgataaacacgaccccaaaagaagt
gctgctgaaatagtaatgactgaattacatgccggtggaaagtttgatcaaaatagttat
aaagtttctggtggattacacggtgttggggtcagttgcgtcaatgcattatccaaatgg
ttacgtttaactgttcgccgcgatggcaaaacacactttttagaatttgccaaaggcgtt
gttcaaaatagaaccatcattgaagaaaacggtttaatcatttctccaattccagtaata
ggcacaactgataaaagaggaacagaagttcactttagtgctgatgaggaaatctttggc
aaagtggagtttcattacgaaattttagtaaaacgaattagagagttatcttttttaaat
aatggcgttcatattagagtaattgatgagcgcacaggaaaagaggaagattttgctttt
tcaggaggtgttaaaggttttgttgaatacatcaataaagctaagtctgtattgcatcaa
aatatatttcatgcagttggagaaaaagcagccgaagtgggaggtatgattacctctgaa
gtcgccatgcaatggaatgacggttatacagaacaagttttatgctttacaaacaacatt
cctcagcgtgatggtggtactcacttaaccggtcttcgtgctgcaatgacccgtgtcatt
aataaatatattgatgaaaacgatttagcaaaaaaagcgaaagttgaagtcactggtgat
gacatgcgcgaaggacttacgtgtgttttatcagtaaaggttcctgaaccaaagttttcg
agtcaaacaaaagataagcttgtatcaagcgaagttcgtggcccaattgaagaagttgtt
tcttcaactctaactgcatttttacaagaaaacccaagtgatgcaaaaatcatttgtgga
aaaatcattgaagctgcacggggtagagaggctgctagaaaagcgagggatatgactcgt
cgtaagggagttttggatggtttaggtcttcctggaaaacttgcagactgtcaggaaaaa
aatccagctaattctgaattatttattgttgagggagactctgcgggaggctcagccaaa
cagggtcgagatagaaaatttcaagcaattctgccattaaagggcaagattttaaatgtt
gaaaaagcccgttttgataagatgctggctagccaagaagtagtaacactcattacagca
ttaggcacgggaatcggtgttgaagaatataacattgaaaaacttcgctaccatcgcatt
attattatgacggacgcggacgttgacggaagccatattagaactcttttacttactttc
ttttatcgtcaaatgcctgaactcatccaaagaggccatatttatattgctcagccgcct
ctttacaaagttaaacatggcaaaactgaacagtatattaaggatgatattgcattaact
agttatttaattgaaatagccctaagtagtgcacaaataattaatgcaaataatgacata
tttgagggagataatttaaagcagttaactaccctatattatttaactcaaactgtgatt
gatagactatctagaacgatggatgcagatgttcttcgtgtgattagcgagggcgttgat
attcgtcttgactctttagatgatgcttcggcatctgcaaaagagttgtctgcggcactt
cagaaacgcttaggtgacaatagccaaagtttagaaattattcctcagcttgaggaaaga
acagagcgttatcgtttattggtatcgcgtcgcgtgcacggtaatctaaagttgtcattt
atcaattcagactttatccatggatctgattatgcttcgattaaagcattttctcagtct
gaggctggaaaaattggggttggttccaaagtaaaacgcggcgacccagatagaagcaaa
gagtttgcagtaggtaattttcaagaagcggtctcatggttaatttctgaagctgagcga
acagtctctcgccagcgttataaaggtcttggggagatgaatccaagtcagttatgggaa
acaacaatggatacaagcacaagaacattattaaaagtgcaaatagaagatgctatttac
gcggatcaaacatttatgacccttatgggtgatgatgttgaaccaaggcgagcctttatt
gaaacaaacgccttgatcgcgaaaaatatcgatgtctga
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