Polynucleobacter sp. SHI2: PSHI2_00480
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Entry
PSHI2_00480 CDS
T10386
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
poly Polynucleobacter sp. SHI2
Pathway
poly03020
RNA polymerase
Brite
Enzymes [BR:
poly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSHI2_00480 (rpoC)
Transcription machinery [BR:
poly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSHI2_00480 (rpoC)
DNA repair and recombination proteins [BR:
poly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSHI2_00480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BDW09966
LinkDB
All DBs
Position
54876..59111
Genome browser
AA seq
1411 aa
AA seq
DB search
MKALLDLFKQAHGDEQFDAIKIGLASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKFRGVICEKCGVEVTLAKVRRERMGHIDLAAPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVVDPGLTPDGVMKRGQIMSEDEYAAKVEEHGEGAF
TAKMGAEGIRDLLRSIQIDREVETLRADLKATGSDAKIKKYAKRLKVLEAFQTSGIKPDW
MILDVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLLELRAPEIIVRNEK
RMLQEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIV
VGPNLKLHQCGLPKLMALELFKPFIFNKLETLGIATTIKAAKKEVENQTAIVWDILEEVI
RQHPVMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEA
QMEARSLMLASNNILFPANGEPSIVPSQDIVLGLYYATRDKINGKGEGLFFADISEVLRA
YDAGQVELASRIAVRINEWDVVDKKAEGEARFQKKTTLYPTSVGRAILSEILPKGMAFEN
INKPLKKKEISRLINTSFRKCGLRETVIFADRLLQSGFKLATKAGISIAIDDMLIPAQKE
KIIHDASSKVKEYEKQFMSGLVTNQERYNNVVDIWGAAGDQVGKAMMEQLSQETVEDRHG
AQVKQESFNAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQ
YFISTHGARKGLADTALKTANSGYLTRRLCDVTQDLVVIEDDCGAVDGVTMKALVEGGEI
IEALRDRILGRVTIGEVIHPDTQQTIVDDDTLLDEDMVDDIVASGLDEVKVRTVLACKTR
YGLCAKCYGRDLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRALVASNVE
AKSSGIVRFSSSMRYITNPKGEQIVISRSGEALITDDHGRERERHKVPYGATLLVSDGGV
VKAGASLATWDPLTRPIISEFAGQIHFENVEEGVTVAKQVDDVTGLSTLVVIDGKRRSAA
AKGIRPIIKILDESGAEVKLAGTDHPVTIGLQFGALITVKDGQAVKTGEVLARIPIESQK
TRDITGGLPRVAELFEGRSPKDAAVLAKITGTVSFGKETKGKQRLVITDMDGESHEFLIP
KEKQVLVHDGQVVNKGEMIVEGPADPHDILNLKGIEELSMYIVDEVQDVYRLQGVKINDK
HIEVIVRQMLRRVQVVDAGETNFITGEQVERSKLFDENDRVIAEGKRPAIYENVLLGITK
ASLSTDSFISAASFQETTRVLTEAAIMGKVDTLRGLKENVIIGRLIPAGTGLSYRKARKA
REQFERDRAQTIAAEEAFITPVEEAPVADAE
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctggatttatttaaacaagcgcatggtgatgaacagtttgatgcaatc
aaaattggtttagcatcaccagaaaaaattcgctcatggtcttatggagaagttcgtaag
cctgaaacaattaactacagaactttcaagccggagcgtgatggcttattctgcgccaaa
atttttggccctatcaaagactatgagtgcttgtgtggaaaatataagcgcttgaagttt
agaggtgttatttgtgaaaaatgtggcgttgaggttacattagcaaaagtacgtcgtgag
cgcatgggtcatattgacttagctgcaccagtcgcacatatttggtttttaaagtcatta
ccatcccgtctcggtatggttttggacatgaccttgcgcgatatcgagcgtgttctttat
tttgaagcatatgtagtagttgatccaggcttaactcctgatggagtaatgaagcgtgga
caaattatgtccgaagacgagtatgctgccaaagttgaagagcatggcgaaggagcattt
acagccaaaatgggcgctgaaggtattcgtgatcttttgagaagtatccagattgatcgc
gaagtagaaactttacgtgcagatttaaaagcaactggtagcgatgcaaaaattaaaaaa
tacgcaaagcgcttaaaagttttagaggcgtttcaaacctctggaatcaaacctgattgg
atgattttagatgtattgcctgtattgccaccagagttacgtccattagttccattggat
ggcggacgttttgcaacttctgatttaaatgacttatatcgtcgtgtaatcaatcgtaat
aatcgtttaaagaaattgcttgaactgcgcgcaccagaaattattgtgcgtaacgaaaag
cgtatgttacaagaagccgttgactcattactagacaatggtcgtcgtggtaaagcgatg
actggtgccaataagcgccctcttaaatctcttgcagagatgattaaaggtaagggcggt
cgtttccgtcaaaacttgttgggtaaacgcgtagactattctggtcgttcagtcattgtg
gttggaccaaatctgaaattacatcagtgtggtttgccaaaattgatggctttagaatta
tttaagccatttatttttaacaagcttgagactcttggcattgctaccacgattaaagca
gcgaagaaggaagttgaaaaccaaacggcaatcgtttgggatatcttagaagaagtgatt
cgtcaacatccagtgatgttgaatcgtgctccaacccttcaccgtttagggatccaagca
tttgaacccctcttaattgaaggtaaagcgattcaattacacccattagtttgcgccgca
tttaacgctgactttgacggtgaccaaatggcggttcacgtacctttatcactcgaagcc
caaatggaagcacgttcactcatgcttgcatcgaacaatatcctcttcccggcaaacggc
gagccatccattgttccttcacaagatatcgttttaggcttgtactatgcaacacgtgac
aagattaacggtaaaggcgaaggcttgttttttgctgatatctctgaagtattgcgtgca
tatgatgcgggacaagttgaacttgcctcacgtattgccgtaagaattaatgagtgggat
gttgtagataaaaaagcagaaggcgaggcccgttttcagaaaaagacaactctttatccc
acctctgtagggcgtgctattttgtctgagattttgcccaaaggcatggcatttgaaaac
attaacaagccactgaagaaaaaagaaatctctcgcttgatcaacacctcattccgtaag
tgtggattgcgcgaaaccgtgatttttgctgacagacttttacaatctggatttaagtta
gcaaccaaggcgggtatctctattgctattgatgacatgctcattccagcgcaaaaagag
aagatcattcatgatgcttcaagcaaagtgaaagagtatgaaaagcaatttatgtctggt
ttagtgaccaatcaagagcgttataacaacgttgttgatatttggggtgctgctggagat
caagttggtaaagcaatgatggagcaattatctcaagagactgttgaagatcgtcatggc
gcgcaagttaagcaagagtcatttaatgcaatttatatgatggctgattctggagcccgt
ggatcggccgctcagattcgtcaacttgcgggtatgcgtggcttgatggcaaagccagat
ggctccattattgagacaccaattactgcgaacttccgtgaaggtttgaatgttttgcaa
tactttatttcaacgcacggcgcacgtaaaggtctagctgatacggctctcaaaactgca
aactcaggttatttaacacgtcgactttgtgatgttacgcaagatctcgtggttattgaa
gatgattgcggcgcagttgatggcgtaaccatgaaggcgttggttgagggcggtgagatt
attgaagcacttcgcgatcgtattttaggtcgtgtgacaattggtgaagtaatccaccct
gatacccaacaaacgattgttgatgatgatactttgttagatgaagacatggtggatgac
atcgttgcttcaggattagatgaagtaaaagtaagaactgtgcttgcatgtaaaacacgt
tatggtttatgcgcgaagtgttatggccgtgatttaggtcgtggtggcttagttaacgta
ggtgaggcagtcggtgtgatagctgctcagtcaattggtgagccaggaacgcagttaact
atgcgcacattccacattggtggtgcggcgtctcgtgctttagttgcaagtaacgttgag
gcgaaatcaagcggtattgtacgtttctcatcttcaatgagatacatcacaaatccaaaa
ggtgagcaaatcgttatttcacgatctggagaagctttaattactgatgatcatggacgt
gagcgtgagcgtcataaagttccatacggcgcaacacttttagtgagtgatggcggcgtt
gttaaggctggtgcaagcttggctacttgggatccattgactcgtccaattatttctgag
tttgctggtcaaatccacttcgaaaacgtagaagagggtgtaaccgttgcgaaacaagtg
gatgatgtaactggcctctctacattggttgttattgatggtaagcgtagaagtgccgct
gctaaaggtattcgtccaattatcaagattcttgatgagtcaggtgctgaagtgaaattg
gcaggtacagatcacccagtaactatcggacttcaatttggagctttgattaccgttaag
gatggtcaagccgttaagactggtgaagttcttgctcgtattccaattgagtcacagaaa
acacgtgacattaccggtggtttaccgagagttgctgagttgtttgaagggcgctctcca
aaagatgcagcggttcttgcgaagattacaggaacagtttcgtttggtaaggaaactaaa
ggtaaacaacgtttggttattacggacatggatggtgagtcacatgagttcttaattcca
aaagagaaacaagtattggttcatgacggtcaagttgtcaataaaggcgagatgattgtc
gaaggccctgcagatccgcatgatattttgaatctgaaaggcattgaggagctctccatg
tacattgtggacgaggtgcaagacgtctaccgtttacaaggcgtaaaaatcaatgacaag
catattgaggtcattgttcgtcaaatgttacgccgtgttcaagttgttgatgctggtgaa
acgaactttattaccggtgaacaagttgagagatccaaactgtttgatgagaatgaccga
gtgattgctgaaggaaagcgcccagctatatacgaaaacgtattgttgggtattacaaaa
gcgtctttatctactgatagctttatttcagcggcatctttccaagaaacgacgcgtgtt
cttactgaagctgcgattatgggcaaagttgacacattacgtggactgaaagaaaacgtc
attattggccgtttgattccagctggaacgggcttgtcatatcgtaaagcacgtaaggca
agagagcagtttgagcgtgatcgtgcacaaacgattgcagctgaagaggcttttattacc
cctgtagaagaagcgccggtagccgacgctgagtaa
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