Polynucleobacter sp. SHI2: PSHI2_05310
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Entry
PSHI2_05310 CDS
T10386
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
poly Polynucleobacter sp. SHI2
Pathway
poly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSHI2_05310 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poly03019
]
PSHI2_05310 (rhlE)
Enzymes [BR:
poly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSHI2_05310 (rhlE)
Messenger RNA biogenesis [BR:
poly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSHI2_05310 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ERCC3_RAD25_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDW10449
LinkDB
All DBs
Position
524691..526073
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AA seq
460 aa
AA seq
DB search
MNELNPTPPTLSVEESAAELSSKKLEFTQLGLSPKILQAVQEQGYTHPTPIQEQAIPHVL
AGKDVMGAAQTGTGKTAAFVLPILEKISPFANTSSSPARHPIRALVLTPTRELSDQVAEN
AFKYSKYTDLRTAVVFGGVDISSQTQSLRAGVELLIATPGRLLDHLSQKNANLSQVQILV
LDEADRMLDMGFLPDLQRIMSLIPSGLRQTLLFSATFSPEIKKLAQQYLKDPVIIEVSRQ
NQTADTVTQMVHLVDSSNKLKVLQTILHQRQVKGLPTQCIIFANSRIGCARLSRALSQSG
IKAEAIHGDKSQVERMSILDQFKKGEIDALVATDVAARGLDIPSMPCVINFELPFNAEDY
VHRIGRTGRAGAKGDAIALVDPSEMKLLADIEKLTKKPLIKIPTPSTSSRENMDPFFYLP
YQSEAVSTTNPVDEPTKSITKSVSPTKALGALLGGAKKTK
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaattaaatccaactcccccaactctttctgtcgaggaaagcgcagctgaactt
tcctcaaaaaagcttgagtttactcagctcggattaagtccaaagattctccaagcagtt
caagagcagggctatacccatccaaccccaatccaagagcaggcaataccgcacgtattg
gcaggaaaagacgtgatgggtgccgctcaaacaggaactggaaaaactgccgcatttgtt
ttacccattttggagaagatttctcccttcgccaatacaagttcatctcctgcgcgtcac
ccaattcgggctttagttcttactcccacccgtgagttaagtgatcaagtagcagagaat
gcttttaaatattcaaaatataccgatttaagaacagcagtagtttttggtggagtggat
atttcttcgcaaacccaatctttgcgagctggagtggaattgttgattgcaactccagga
agattactcgatcatttatcacaaaaaaatgcgaacttgtcgcaagtgcaaatattagta
ttagatgaagcagatcgcatgctcgatatgggttttttgccggatcttcaacgcatcatg
tcgttgatcccatctggtcttagacaaacattattattttcagcaacgttttctccagaa
ataaaaaaattagcgcaacaatacctaaaagatccggtgattattgaggtatcgagacaa
aatcaaacagcagataccgttactcaaatggtgcacttagttgattcatcgaataagtta
aaggtacttcaaacgattttgcatcaacgtcaagtaaaaggattaccgacgcagtgcatt
atttttgccaatagtcggattggctgtgcacgactctctagagctctaagtcaaagcggt
atcaaagcagaagcgattcatggcgataaaagtcaagtagagcgcatgagtattcttgat
caattcaagaaaggggaaattgatgcgctagttgccactgatgtcgccgctcgaggatta
gacataccgagtatgccgtgcgtgattaattttgaattaccattcaatgctgaggattac
gttcatcgaattggtagaacgggcagagcaggagctaagggtgatgcaatcgccttagta
gacccatctgaaatgaaactacttgctgatattgaaaaattaactaaaaaaccgttaatt
aaaataccaacgccgagtactagttcccgagaaaatatggatccatttttctatctccct
tatcaatcagaagcggtctcaacaactaaccctgtagatgaaccaacgaaatctataaca
aaatcagttagtccaactaaggcactaggcgctttgcttggcggggctaaaaaaactaag
taa
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