Polynucleobacter sp. SHI2: PSHI2_05350
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Entry
PSHI2_05350 CDS
T10386
Symbol
cafA
Name
(GenBank) ribonuclease G
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
poly Polynucleobacter sp. SHI2
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poly03019
]
PSHI2_05350 (cafA)
03009 Ribosome biogenesis [BR:
poly03009
]
PSHI2_05350 (cafA)
Messenger RNA biogenesis [BR:
poly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSHI2_05350 (cafA)
Ribosome biogenesis [BR:
poly03009
]
Prokaryotic type
rRNA processing factors
PSHI2_05350 (cafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
BDW10453
LinkDB
All DBs
Position
complement(532870..534318)
Genome browser
AA seq
482 aa
AA seq
DB search
MNEEILINFTPQETRVALVQHGEVQELLIERAQNLGILGNVYLGKVVRVLPGMQSAFVDI
GLEKSAFIHVADINNGADMPIEKLVFDGQTILVQVLKDPLGTKGARLTTHISIAGRNLVY
LPLDEKNGQIGISQRITDEAERDRLKQRLRSILPEELKGCLIMRTSAEEASDRDLEQDLN
YLLLTWSRIHQQTLTKPTPSKIYEELNLIERVMRDIAEESTTVIRIDSAENCTKLQQFAA
TYMPKLVDKIQLYRGERPLFDLFDVENEINLALNRRVNLKSGGYLMIDQTESMTTVDVNT
GSYIGAKTFVDTIYKTNLEAAKAIARQLRLRNLGGIIIVDFIDMHTAEHQTAVLSELNKS
LALDRMKTTVNQFSNLGLVEMTRKRTRESLAHQLCEPCPVCEGKGEVKTAQTICYEILRE
IVREHRQFNPKEFRIVASPDVIDLFLEEQSQFLAELGEFIGKPIRLRSEGSFAQEHYDIV
LL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaagaaattttaattaactttaccccacaggaaacaagggttgctcttgttcaa
catggtgaggtacaagaacttctcatcgaaagagcgcaaaaccttggcattttagggaat
gtttatttaggtaaggttgtacgcgttttgcctggtatgcaatccgcctttgtagatatt
gggcttgaaaaatcagcctttatacatgttgccgatattaataatggcgctgacatgccc
attgaaaaactcgtctttgatggacagactattcttgttcaggttctaaaagaccccctt
gggacaaaaggtgctcgcttaaccacgcacatcagtattgctggtcgtaatttggtgtat
ctcccgctcgatgaaaaaaatggtcaaattggcatttctcaaagaattacggatgaggct
gaacgggaccgcttaaaacaaaggctaaggagcatccttcctgaagagttaaaaggctgt
ttgattatgcgcacaagcgctgaggaagcaagcgatagggatttagagcaagatttaaat
tatcttttactgacctggtcaaggattcatcaacaaaccttaaccaagcctaccccatcc
aaaatttatgaagagctcaatctgattgagcgtgtcatgcgtgatattgctgaagaatct
acaaccgtcatacgtattgattcagcagaaaactgtacgaaactccaacaatttgctgca
acttatatgccgaagctagtggataagattcaactgtatcgtggtgaacgtcctttgttt
gatttatttgatgtggaaaatgagatcaacttggcactcaatcgtagggtcaatctcaag
tccggtggttatctgatgattgatcaaacggaatccatgactacggttgatgtgaatacg
ggcagttatattggggctaaaacctttgttgatacgatctacaaaaccaatcttgaagcg
gctaaagccattgcgcggcaattacgcttaagaaatttaggtggcatcattattgttgat
tttatcgatatgcatacggcagaacatcaaaccgccgtcttgtctgaactcaataagagt
ttggcactagatcggatgaaaacgacagtgaatcaattctcgaatctcggtctggttgag
atgacgcgcaaacgcacgcgagaatcattagcccatcaactgtgtgaaccctgccctgtc
tgtgagggtaagggtgaagtaaaaactgctcaaacgatttgctatgaaatacttcgggaa
attgttcgtgaacaccgtcaatttaatcctaaagaatttagaattgttgcatcgcccgat
gtgattgatttatttctagaagaacaaagccaattcctagctgaactaggcgaatttatt
ggtaaaccgattcgtcttcgctctgaaggaagctttgctcaagaacattacgatattgtg
ttgctctaa
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