Polynucleobacter sp. SHI2: PSHI2_07950
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Entry
PSHI2_07950 CDS
T10386
Name
(GenBank) hypothetical protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
poly Polynucleobacter sp. SHI2
Pathway
poly03030
DNA replication
poly03430
Mismatch repair
poly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSHI2_07950
03430 Mismatch repair
PSHI2_07950
03440 Homologous recombination
PSHI2_07950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poly03032
]
PSHI2_07950
03400 DNA repair and recombination proteins [BR:
poly03400
]
PSHI2_07950
Enzymes [BR:
poly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSHI2_07950
DNA replication proteins [BR:
poly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSHI2_07950
DNA repair and recombination proteins [BR:
poly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSHI2_07950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
RNase_H_2
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
BDW10713
LinkDB
All DBs
Position
792373..793797
Genome browser
AA seq
474 aa
AA seq
DB search
MRSLIDHFPPLAFVDIETTGGNPDRDRITEIGIITHHEGESHQWEQLINPGTGIPQNIQQ
LTGITPAMVISKPSFEDLSSEILLELKDKIFIAHNARFDYGFIKASFERMGIDFRAKVIC
TVKLSRLLFPTQARHNLDTIIATHGLHVSSRHRALGDADVLQQFWQTCLAQFGEDRMRQA
VQELLQSPSLPPNIDAKLVDEIPEKPGVYIFYAENRRPLYIGKSNSMKTRVMSHFSSALK
VRKEMKLAMQVKDIDWIETSGEIGALLLESRLIKEQLPSMNVKLRRSRDLCAWQMNLNEY
GVLTPALVRHQDLQPGVQENLYGLFYSRREALQTLQSLAKKNQLCEGLLGLEKIAPGKPC
FGYQVKQCSGACVGEEALSQYHLRLQTVLSKFKVQVWPYRGPVGIQEGGQIHVIDHWCYL
GSAFNEDEVYELIQGGKPEFDLDIYKMIKKYLKTLPPQRVVQLPSRQQRLSVDD
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcactgattgatcatttcccgccactggcttttgtcgatattgaaaccactggg
ggaaaccctgatagggatcgcattacggagatcggtattattacccatcacgaaggcgag
tcccatcaatgggaacagctcatcaatccaggtacaggaatacctcaaaacattcaacaa
ttaactggtattactcctgccatggtaattagtaagcctagttttgaagatcttagttct
gaaatattgcttgagttaaaagataagatttttattgctcataatgcgcgatttgattat
ggatttattaaagcctcatttgagaggatgggtatagattttcgagcaaaagtcatctgt
accgtgaaattatcccgacttctttttccgactcaggcaaggcataacttagacaccatc
attgcaactcatgggttacacgtatctagtcgtcatcgggcacttggggatgccgatgtt
ctccagcaattttggcaaacatgtcttgcgcaatttggggaagatcgaatgcgtcaagcg
gttcaagagttgttgcaaagcccatctttgccaccaaacattgatgctaaattagtcgac
gagattcctgaaaaaccaggcgtctatattttttatgctgaaaatcgtaggcctttatat
attggtaaaagtaactccatgaaaactagagtcatgagtcatttttcgagtgctttaaaa
gtacgaaaagaaatgaagttggcaatgcaagtgaaagacattgattggatagaaacttca
ggtgaaattggtgccttattgcttgaatcacgattaatcaaagagcaattgcctagtatg
aatgtgaagttacgtcgttcaagagacttatgtgcttggcaaatgaatctcaatgaatat
ggcgtattaactcctgcattagtgcgacatcaagatttacaaccgggtgttcaagaaaac
ttatacggacttttttacagcagaagagaggcattacaaactttacaaagtttggcgaaa
aagaatcaattatgtgagggcttgttggggcttgaaaaaattgcacctggtaagccttgt
tttggttatcaagtcaagcaatgttccggcgcctgtgtaggcgaagaagcgttgtcacaa
tatcacttacgattacaaacggtactatcaaagtttaaagtgcaagtttggccctatcgt
ggacccgtcggtattcaagagggaggccaaatccatgttattgatcattggtgttatctt
ggttcagcctttaatgaagacgaggtgtatgaattaattcaagggggtaagcctgagttt
gatttagatatctataagatgatcaagaaatatctgaagacattaccaccacaacgcgtg
gttcaactaccatcgcgtcaacaacgtctgagcgtggatgattag
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