Polynucleobacter sp. SHI2: PSHI2_08820
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Entry
PSHI2_08820 CDS
T10386
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
poly Polynucleobacter sp. SHI2
Pathway
poly03410
Base excision repair
poly03430
Mismatch repair
poly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSHI2_08820 (recJ)
03430 Mismatch repair
PSHI2_08820 (recJ)
03440 Homologous recombination
PSHI2_08820 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poly03400
]
PSHI2_08820 (recJ)
DNA repair and recombination proteins [BR:
poly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PSHI2_08820 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PSHI2_08820 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSHI2_08820 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
YrzO
Motif
Other DBs
NCBI-ProteinID:
BDW10800
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Position
complement(869880..871628)
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AA seq
582 aa
AA seq
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MTMQLVERNTSSNSAEELIAHGIHPILAKLWATRGIQSFEQTSLELKHLIPPQELKNCAA
SAVYLADALANHKNILIIADYDCDGATACAVGILGLEQLGKPYGTKIHFLVPNRFTMGYG
LTPEVVDLAARQTPKPDILITVDNGIASIAGVARANELGMEVIVTDHHLPADELPSAKLI
INPNQPGCIFSSKALAGVGVIFYILLALRAELRHRGLFDQETQPRLETLLDFVALGTVAD
VASLDRNNRILVSAGVRRMRNGQMHPGIQALFEASGRDYQKSNTFDLGFGLGPRLNAAGR
LADMTLGIKCLISQDLFEARKFAKELDTMNRERREIEGSMQETALINLADISTGDTYSLC
MFDTSWHQGVIGILASRLKDKYHRPVIVFAPGEETSPSGSPVLKGSGRSISGFHLRDAID
YISKKNPEMILKFGGHAMAAGLSIEQTHLASFQQAFESIAKDWIDEDTLLRKLVHDGELP
YEMINAQLAEHLSNEIWGQGFPEPVFTGKFKVIKQSLLKEKHLKLELQALDGEMKKNILG
IWFGHTELLPPQTHLAYRLLVDHYLGYPRAQVHVEAAFDSPT
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgcaattagttgaacgcaacacctcaagcaactccgctgaagaattaattgct
catggtatccatcccatcttagcaaagctgtgggctactcgaggcatacaatcctttgag
caaacaagtctagagttgaagcatttaattccacctcaagaactcaaaaactgtgcggca
tctgccgtttatttggctgatgctttagcaaatcacaaaaatatactcatcattgctgat
tatgattgtgatggcgctaccgcttgtgctgtgggtatccttggattagagcaactcggg
aaaccttatggtacaaaaatccactttttagtccccaatcgttttacgatgggttatgga
ttaacgccagaggttgtcgatcttgctgcgcgacaaacgcctaaacccgatattctcatt
acagtggataacggcattgctagcatagccggtgtcgcacgcgcaaatgaattaggaatg
gaggttatagttacagaccaccacctccctgcagatgaacttccttccgcaaaacttatt
attaaccccaaccaacctggatgtattttctcaagtaaagcactggctggtgttggcgtt
attttttatattctcttagccttacgagctgagcttcgccatcgtggcttatttgatcaa
gaaactcaaccccgcttagaaacacttttagacttcgttgctctgggaacagtcgctgat
gtagcaagcctggatcgtaataatcgcattctagtttctgcgggagttcgtagaatgcgt
aacggtcaaatgcatcccggtattcaagcactgtttgaagcaagtggtagagactatcaa
aaatcaaatacctttgacttaggttttggcttaggtcctagactaaatgctgctggtaga
ctagctgatatgactttgggaattaaatgcttaatttcgcaggatctgtttgaagcaaga
aaatttgctaaggaattagatacgatgaatcgagagcgtcgggagattgagggctcgatg
caagaaactgcactcatcaatttagcagatatctcaacgggtgatacctacagtttatgt
atgtttgatacatcttggcatcaaggggtcattggtatattagcctctcgattaaaagat
aagtaccatcgtcccgtcattgtgtttgctcctggtgaagaaacttccccttcaggctct
cccgttctgaaaggctctggtagatcgattagtggctttcatttacgcgatgcgattgac
tatatttcgaaaaaaaatccggagatgattttaaaatttggcggtcatgccatggctgct
ggactatcaattgagcagactcatcttgcatcctttcaacaagcatttgaatcgattgct
aaggattggattgatgaggataccttgctacgaaaattagtacatgatggcgaacttccc
tatgagatgattaacgctcaattggccgaacatctatcaaatgaaatctggggtcaaggt
tttcctgagcctgtttttacaggaaagtttaaagtcatcaaacaatctttattaaaagaa
aaacatctcaaactggaattgcaggcgttagatggtgaaatgaaaaaaaatatcttaggt
atttggtttggacatacggaactccttcccccgcaaacccacttagcctaccgcttatta
gttgatcattacttgggatatccgcgtgcgcaagtccatgttgaggcggctttcgattct
ccaacataa
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