Polynucleobacter sp. SHI2: PSHI2_09540
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Entry
PSHI2_09540 CDS
T10386
Name
(GenBank) hypothetical protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
poly Polynucleobacter sp. SHI2
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poly03400
]
PSHI2_09540
Enzymes [BR:
poly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSHI2_09540
DNA repair and recombination proteins [BR:
poly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
PSHI2_09540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
BDW10872
LinkDB
All DBs
Position
958638..961490
Genome browser
AA seq
950 aa
AA seq
DB search
MSLIERSVLAHHGALQDVAKAIWAHAQQCGQSPIVLTSTSGPITDLRKLLETSRPTAIDP
KIAFLPKILSVSDWLEKTPSLLTLPPVLSSLQRWEKVYGELAKHPKIQRQFGVIGEGGRW
ALTKAIVQACDFLTQANIAFAPPKPQHQDQTYEHVQAQLDAIIHQAYKNDTAYANEEGQL
IFAFWKYLTRTEDSLVRERMAYQYRQQELATANPPPLVWLDMATPTKTLQTIQAEFLNAY
AQHQAVLKIGINWQQSALWPECITKTTSDFDAATIAQIQTNRQKHQQPTWRIIKQPNFEK
MAWAALACIEEHIQHERNDIAIVAQDRLVARRVRALLARYGDRISIKDPTGWKLATTSAA
AAVQSYLQLIASSEGPSLVTFIGFLKNPMLDWQVLLAAHTQNQTIDHLDFSWWMESRLLA
NQVGIGWQELQSAFAQESRHDEHSQSADYRQIAQAILTQLQSFSIAWQNSQSTSQEWVDR
LKEHLDSFGMIDTLTEDEAGQSYLNMLDELRELQEETLKNSAWTSLLDQWIDQASYTQKS
PKKSVNISFITLSAIRFHHYSAVVFIGCDAKQLPSNKDYGSIFSRAMLKELDQDLPEAEY
IQQARDLSQLLTTHAHVDLLWQEYQQAQEKNRICPWLARLQIDMPSLDKSIAIYEGDEQS
QPQPQSSTPILLPGLLPNKLSPSAYKALRACPYQFYVSYVLGLRSPKALQDPSEFGQIGS
ALHAILHQFYQEYQQQTFSDPISQRQWMMDHLEGISKEQWKILIEQNGQLFADQQKWFKQ
IESLVDWQLDLEKNSFTFVESEKDVEFKLQLSSGELITIYGRVDRVDSNDNSELQVWDYK
LKDGKDLKIFNKHLWDNPQILIYSKALSETHHYRHQNVKQAGWVSLREAKEAQRDFKLAV
TPDILDKMENQIREDLDQVWTGIAMPANGPQQVCKYCDARGICRKGMWEA
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgtcattgatagaaagaagtgtcttagcgcatcatggtgcattgcaagatgtggcaaaa
gcaatctgggcgcatgcacagcaatgtggtcaatcacccattgttttaacatcgacttca
ggccccattaccgatctacgaaaactactcgaaacatctaggccgactgcgattgatccg
aagattgcctttttacccaaaatactcagtgtgtctgattggttggaaaaaacaccgagt
ttgctcacacttcccccagtcctcagttctttgcagcgatgggaaaaagtgtatggtgag
cttgcaaagcatcccaaaattcaacgtcagtttggcgtcattggcgaaggtggacgatgg
gcgttgaccaaagcgattgtgcaggcatgtgattttttaacacaagccaatattgccttt
gctcccccaaaaccccagcatcaagatcaaacctacgaacacgtgcaagcgcaattagat
gccatcattcatcaggcttataaaaatgatacggcatatgctaatgaagaagggcaactt
atttttgccttttggaaatacctcacacgtacagaagattctttggtgcgagagcgcatg
gcatatcaatatcgtcaacaagaacttgcaacagcaaacccaccacccctcgtgtggtta
gacatggcaacaccaaccaaaaccctacagactattcaagctgaattcttaaatgcgtat
gctcagcatcaagcagtacttaagattgggatcaattggcaacaaagtgccttatggcca
gagtgcatcacaaaaacaaccagtgactttgacgccgcaactattgcacaaatacaaacg
aatcgtcagaaacatcaacagccaacatggcgcatcatcaaacagccaaattttgagaag
atggcctgggcggcacttgcgtgtatagaagagcacatccaacatgaacgaaacgacatt
gctatcgttgcccaagatcgattagttgcaagaagagtacgagcgttgctggcgcgttat
ggcgatcgcatctccatcaaagaccccaccggttggaaactcgccactaccagtgcggca
gcagcggtgcagagttatctgcaactgattgctagttctgaagggccgagtcttgtgacc
ttcattggttttttaaaaaatccgatgctggattggcaagtcttgcttgcagcacataca
caaaatcaaaccatcgatcatcttgatttttcgtggtggatggaaagtcgactcttagcg
aaccaagtcggaatagggtggcaagagttacagtccgcttttgcacaagagagtagacat
gatgaacattcacagagtgcggattatcgccagattgctcaggcaatactcacccaatta
caaagttttagtattgcttggcaaaattcacaatccactagtcaagaatgggtggatcga
ttaaaggagcatttagacagttttggcatgattgataccttaaccgaagatgaagcaggt
caaagttatttgaacatgttggatgagttacgtgaattacaagaagaaactctaaagaat
agcgcatggacgagtcttttagatcagtggattgatcaagcatcctatacccaaaaatcc
cccaaaaaatccgtcaatatttcttttattaccttatccgcgattcgttttcatcattat
tcagccgtggtgtttataggttgtgatgcaaagcagttgccaagtaataaagattacggc
tccatcttttcaagggcgatgttaaaagagcttgatcaagatttaccagaagcagagtac
attcaacaagccagagatctctcgcagttactcaccacccatgcacatgtcgatttgtta
tggcaagagtatcaacaagcacaagaaaaaaaccgcatatgtccttggttagcaagattg
caaatcgacatgccttctttagataaatcgattgctatttatgaaggtgatgaacaaagt
caaccccaaccccaatcgagcacaccgattctcttgccagggctattacccaacaaactc
agtccaagtgcatataaagccttgcgcgcttgcccatatcaattttatgtatcgtatgta
ttgggactaaggtccccgaaagctttacaagatccatctgagtttgggcaaattgggagt
gccttgcatgccatcttgcaccagttttatcaagagtatcaacaacaaacattttcagac
ccaatcagtcagcgtcaatggatgatggatcatttggaaggaatttcaaaagagcagtgg
aaaattcttatcgaacaaaatgggcaattatttgcagatcaacaaaagtggttcaaacaa
attgagtctttagtggattggcaattggacctagaaaagaacagctttacatttgtagaa
tcagaaaaagacgtagagtttaagttgcaactgagtagtggtgaattaattaccatttat
ggtcgggtagatcgtgtggatagcaatgataattcagagctacaagtttgggactataaa
ttgaaagatggtaaagatttaaaaatatttaataagcatctctgggataatccgcagatc
ttgatctacagtaaagctctttcggagacccatcattaccgccatcaaaatgtgaagcag
gcgggttgggtcagtttacgagaagcgaaagaagcacaaagagacttcaagttggctgtc
actccagacatcttagataagatggaaaatcaaatccgtgaggatctggatcaagtttgg
acaggtatagccatgccagcgaatggccctcagcaggtttgtaagtattgtgatgcacgt
ggcatttgcagaaaaggaatgtgggaagcatga
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