Polynucleobacter sp. SHI2: PSHI2_11930
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Entry
PSHI2_11930 CDS
T10386
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
poly Polynucleobacter sp. SHI2
Pathway
poly03030
DNA replication
poly03430
Mismatch repair
poly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSHI2_11930 (holB)
03430 Mismatch repair
PSHI2_11930 (holB)
03440 Homologous recombination
PSHI2_11930 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poly03032
]
PSHI2_11930 (holB)
03400 DNA repair and recombination proteins [BR:
poly03400
]
PSHI2_11930 (holB)
Enzymes [BR:
poly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PSHI2_11930 (holB)
DNA replication proteins [BR:
poly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PSHI2_11930 (holB)
DNA repair and recombination proteins [BR:
poly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PSHI2_11930 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
Motif
Other DBs
NCBI-ProteinID:
BDW11111
LinkDB
All DBs
Position
1215974..1217020
Genome browser
AA seq
348 aa
AA seq
DB search
MSSDVVTSNSFLYPWLSKPFFELTQNKIPHSLLLFAQKDIGELQFGLELANYLLCESQGS
KPCGQCEACHWVRQGNHPDLFIVVPQILKNLLPFEVQDEQVGEDGEEKKQSKFIRIEQIR
HIISSNELGSYRGGKRVVLIYPIEAMQAEAANCLLKTLEEPSNQLHFILLTNQLEKILPT
IRSRCHLFPIPRPSLELVVRWLQSQLPEEYADQELEQKLLLHAGSPLKVISSLHEKALDD
SIITKQLSQFNLLHSGEIIDLLGQYALLDILNSILKWSFDMNLVLFGQKPRYFPQLEGRM
KIACSNLNKISLQQFLASLKDDIRLANHPLFPKVQLDAVLMRYKQLFN
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgagctctgatgttgttacttcaaatagctttttatatccttggttaagtaagcctttc
tttgaacttacccaaaataaaatcccacattcattattgttatttgctcaaaaggatatt
ggagagctccaatttggccttgagttagctaattacctattatgtgaatcccaaggaagt
aagccctgtggtcaatgtgaggcttgtcattgggtgcgacagggcaatcatcctgattta
tttattgttgttccacagatcctcaaaaatcttcttccttttgaggtacaagatgaacaa
gtaggggaggatggtgaggaaaaaaaacaaagtaagtttatccgtatagagcaaatacgg
catatcatttctagtaatgagttgggttcttatcgaggtggtaaaagggttgttttaatt
tatccgatagaggcgatgcaagctgaagctgcaaattgtttactcaaaacactggaggaa
ccctccaatcagttacattttattttgctgactaatcaacttgaaaaaatcttaccgacc
attcgatcgcgttgccatttatttcctattccaagaccttcactcgaattggtcgtgagg
tggcttcagtcccaacttccagaagaatatgctgatcaagaactagagcaaaaactatta
ctgcatgcaggatcaccattaaaagttatttcttcattgcatgagaaggctttagatgat
tccatcattacgaaacaattatctcaattcaacctgttacattcaggtgagataatagac
ctgcttgggcaatatgcccttttagatatattaaatagtattttaaaatggtcttttgat
atgaatctagttctatttggtcaaaagcctcgatattttcctcaactagaggggcgaatg
aaaattgcatgtagcaacttaaataagatatctttgcaacaatttttggctagtttgaaa
gatgatattcgcttagccaaccatcctttatttcccaaagtgcaattagacgcagttttg
atgcgttataaacaactttttaattaa
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