Polynucleobacter sp. SHI2: PSHI2_12650
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Entry
PSHI2_12650 CDS
T10386
Symbol
radA
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
poly Polynucleobacter sp. SHI2
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poly03400
]
PSHI2_12650 (radA)
DNA repair and recombination proteins [BR:
poly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PSHI2_12650 (radA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATPase
AAA_25
Zn_ribbon_LapB
AAA_22
ChlI
GvpD_P-loop
DnaB_C
Lon_C
AAA_16
nSTAND3
AAA_14
nSTAND_NTPase5
SLFN-g3_helicase
AAA_24
NTPase_1
ABC_tran
AAA_5
TniB
MCM
A2L_zn_ribbon
DUF7125
ATPase_2
MeaB
NPHP3_N
AAA_19
NACHT
AAA_29
Stc1
DAP3
Motif
Other DBs
NCBI-ProteinID:
BDW11183
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Position
complement(1287396..1288757)
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AA seq
453 aa
AA seq
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MSKVKSQYVCQSCGASFPKWSGQCAACQEWNTLEEFLEKSSNQRFIGLTKTAPSQKLSQI
TLEDYGRISTLIPEFDRVLGGGLVDAGVVLIGGDPGIGKSTLLLQTLASLSQAGESVMYI
SGEESSAQIALRAQRIGSFAPDLDIYPEILLEKIIPTLEAVKPRVAVIDSIQTIYSEALS
SAPGSVAQVRECASQLTRLAKSSGISILLVGHVTKEGNIAGPRVLEHIVDTVLYFEGDPQ
SSFRLVRAIKNRFGAVNELGVFAMTDKGLKGVSNPSALFLSQSNASVPGTCVLVTQEGTR
PLLVEIQALVDQSHVPNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKI
TEPAADLAVLLAIQSSLKNKPLPRDLVVFGEVGLAGEIRACPRGQERLKEAAKLGFKRAI
IPKANLPKQSQFDNMELISVERIETALQIVRDL
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
gtgtctaaagttaaatctcagtacgtttgtcaaagttgtggggcaagctttcctaaatgg
agtgggcagtgtgcagcttgtcaggagtggaacacacttgaagagtttttagagaagtca
tcgaatcagcgctttattggattaactaaaaccgcaccctcccaaaagttatctcaaatc
actcttgaagattacggtcgaatatcaaccttaatccccgaatttgatcgcgtattgggt
ggcggactagtcgatgctggggttgttctcattggtggcgaccctggtattggtaaatca
acattgctgcttcagacactggccagtttaagccaagctggcgagtcagtgatgtatatc
agtggcgaggaatcctctgctcaaattgctctgcgcgctcaaagaattgggtcatttgcc
ccagacttagatatttacccagaaattcttttagagaaaatcatacccacattagaggct
gtaaagcctcgagttgcagtcatcgactccatccaaactatatattcagaagctttaagt
tcagcaccaggatcagtcgcacaagtacgagagtgcgcatcgcagttaactcgccttgca
aaatcttctggtatatcgatacttcttgttgggcatgtcaccaaagaaggtaatattgca
ggccctcgtgttcttgagcatattgtggatacggtactttattttgaaggtgaccctcaa
tcttcattccgtttagtacgggctataaaaaatcgtttcggcgctgttaatgagcttggt
gtatttgcgatgacggataaaggcctcaaaggcgtgagtaatccatctgctttatttttg
tcgcaaagtaatgctagtgttcctggaacctgtgtgttggtaacccaagagggaacgcga
cctttattagttgaaatccaagcattagtagatcaatcgcatgtacctaatcccagaaga
ttagccgtaggattagagcaaaatcgattagcgatgttacttgcagtcatgcaccgtcat
gcaggaatcgcatgttttgatcaggatgtgtttttaaatgcggtaggtggggtaaaaatt
actgaacctgcagccgatcttgcagtgcttctagccatacaatcctccttaaagaataaa
cctttaccgcgagatttagtggtatttggtgaggttggtttagccggtgaaattagagct
tgcccccgtggtcaagagcgtttaaaagaagcggcaaaactaggatttaagagagcaatt
attcctaaagctaaccttcctaagcaatctcaatttgataatatggagttgattagtgtt
gaaagaattgagaccgcgcttcaaatagtgagagatttgtaa
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