Polynucleobacter sp. SHI2: PSHI2_13560
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Entry
PSHI2_13560 CDS
T10386
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
poly Polynucleobacter sp. SHI2
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
poly03016
]
PSHI2_13560 (truB)
Enzymes [BR:
poly01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
PSHI2_13560 (truB)
Transfer RNA biogenesis [BR:
poly03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PSHI2_13560 (truB)
Prokaryotic type
PSHI2_13560 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
HerA_C
DUF1315
Motif
Other DBs
NCBI-ProteinID:
BDW11274
LinkDB
All DBs
Position
complement(1375064..1376083)
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AA seq
339 aa
AA seq
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MRNETLRWTDGVVLLDKPRGISSQKAVTMVKHACHADKAGHTGTLDPLATGLLAVCLGEA
TKYSQDLFNADKSYIATLLFGVTTDTGDAEGKIIARADEPTSLWVESFAEQLQQILPRFM
GNIAQVPPMYSAIKRDGRPLYAYAREGEIFDLEARQIQITELEVLSCSWPVAVIKVSCSK
GTYIRSLISDLGDALGCGAHMTELRRTRIGHLHLRESQSMEEVIESVKMMEVDSLITHVP
AIVVEHHLALRLKMGQRINVRELLSQESEDLLSQPILRIYHLQQNSKQFMGLVDQKNGVL
HPKRLLATDRLENVLEQGLISQHFSTDISIKHHLENSHF
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaatgaaacattgcgctggactgatggggttgtattactagacaaaccccgcggg
atcagctctcaaaaagcagtgaccatggtcaagcatgcttgtcatgctgataaagctggt
catactggaactttagatcctttagcaaccggtttactagctgtttgtttgggagaggca
actaaatattcccaagatttatttaatgcagataagtcgtatattgccaccttactgttc
ggagttacaacagatactggtgatgccgaaggaaagatcattgctcgtgcagatgagcct
acgagcctgtgggttgagagttttgctgagcaattacagcaaatacttccccgatttatg
gggaatattgctcaagtgcccccgatgtattctgcgattaagcgtgatggtagacccctt
tacgcttacgctagagaaggggaaatatttgaccttgaagcaagacagattcagataaca
gaattagaggttttatcctgttcatggccagtagctgtgattaaagtgagttgtagtaag
ggaacctatatccgtagcttaatttctgatttgggtgatgctttaggttgtggcgcacat
atgacagaactgcgtcgaactcggattggtcatttgcacctgagagagtctcaatcgatg
gaagaagtgatagagagcgtcaaaatgatggaagttgattcattaattacccatgtacca
gccattgtagtagagcatcatcttgcattgcgtttaaaaatgggccaaagaatcaatgtg
cgagaactgctttcccaagaatcagaggacctattgagtcaacccatactcagaatttat
catttgcaacaaaactccaagcaatttatggggcttgtagaccaaaaaaatggagtatta
catcctaaaagattacttgcaacagatcgtttggagaacgtattagaacaaggacttatt
tcgcaacatttcagtactgacatatccatcaagcatcatttagagaattctcatttttag
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