Polynucleobacter sp. SHI2: PSHI2_19820
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Entry
PSHI2_19820 CDS
T10386
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
poly Polynucleobacter sp. SHI2
Pathway
poly03420
Nucleotide excision repair
poly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSHI2_19820
03430 Mismatch repair
PSHI2_19820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poly03400
]
PSHI2_19820
Enzymes [BR:
poly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSHI2_19820
DNA repair and recombination proteins [BR:
poly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSHI2_19820
MMR (mismatch excision repair)
Other MMR factors
PSHI2_19820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BDW11900
LinkDB
All DBs
Position
complement(2021512..2023842)
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AA seq
776 aa
AA seq
DB search
MNDLLDNLNPEQLEAVTLSADPSEAYLPSALILAGAGSGKTKVLTTRIAWLIQTGQVSPI
GILAVTFTNKAAKEMLTRLSSMLPINTRGMWVGTFHGLCNRLLRAHFQDAGLPSTFQILD
TQDQLSAIKRLLKVLQVDDEKYPPKQLQYFISHAKEKGQRPKDLSPSDDFQAMLIKLYAA
YEEQCNREGVVDFSELLLRSYELLKHHEPIRRHYQQRFRHILVDEFQDTNALQYAWLKLL
SNHGGQTPSAVFAVGDDDQSIYAFRGADVANMRLFERQFKPVMVKLEQNYRSHGHILDTA
NHLIANNTERLGKNLRTDAGHGELVRLYEAGSDGAEAGWLIDEIRGLINDGYARSEIAIL
YRSNAQSRIIEHGLFSASIAYRVYGGLRFFERAEIKHALAYLRLLENPNDDTSFSRVVNF
PTRGIGARSIEALQDIAKTQRCSLYTAGSFLEGKSGTAINGFIRLIDYMRDSTKNNTLPE
LIDFVLQHCGLIQHYLTEKEGQDRIENLQELINAATAFIAEEGIGQDTKALTPMEFNTSI
PVEPLFENQSINQTISEMSPLAAFLSHASLEAGDNQAQAGQEAVQLMTVHASKGLEFKAV
FITGLEEGLFPHENSLNEDKGLEEERRLMYVAITRARDRLYISHTQSRMLHGQVRYNLPS
RFIEELPKESVKLLTPKQKDSVWSSHSRQVNPSWGQASLGDDRRSTSHNASSILVSHTRA
KDEHGFHVGQNVFHSKFGEGRILNFEGNGTDTKVQVSFARHGTKWLQLSIAKLSAI
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgatttattagacaacttaaaccccgagcaattagaggctgtaacactaagcgct
gacccttctgaagcatatttaccttcagcccttattttagccggagcgggaagcggaaaa
accaaagttttgacgactcgtattgcttggttgattcaaactggacaagtatcaccaatt
ggtattttagcagttacttttaccaataaagctgcaaaagaaatgttgacccgattatct
tccatgttgccgattaacactcgcggcatgtgggttggtacgtttcatggattgtgtaat
cgactcttaagagcgcactttcaagatgcgggcctgccatcaacatttcaaatattagat
acccaagaccaactctcagccattaaacggctgttaaaagtactgcaagtggatgatgaa
aaatatccgccaaaacaattgcaatactttatatcgcatgcgaaggagaaaggacaacgc
cccaaggatttatctccttctgatgattttcaggcaatgttaatcaagttatatgcagct
tatgaggaacaatgtaatcgagaaggcgtagttgatttttctgagttattgcttcgctcc
tatgaattacttaagcatcatgaaccaattcgtaggcattaccaacaaagatttcgacat
attttggtcgatgagtttcaagataccaacgcacttcagtacgcctggttaaagttattg
tccaatcatggtggacagacgccatcagctgtttttgcagttggtgatgatgaccaaagt
atttatgcttttcgtggtgcagatgttgctaatatgcgcctgtttgagaggcagtttaag
ccagtgatggtgaagttagagcaaaactatcgctcccacggacatatcttagatactgcc
aatcatctcatagccaacaatacagagcgtttggggaaaaatttaagaacagatgcaggt
catggagaattagttcgcctttatgaggccggaagtgatggtgccgaagccggttggttg
atagatgaaattcgcgggttgattaatgacggttatgcccgaagtgaaattgcaattttg
tatcggagtaatgcgcagtcacgaataattgaacatgggctgttctccgctagtattgca
tatcgcgtgtatggtggattacgcttttttgaaagagcagagattaaacatgccttagca
tatttacgccttttggaaaaccccaatgacgacacatcattttctagggtggtgaatttt
ccaacaagaggtattggggcaagatcaattgaagcattacaggatattgccaaaactcaa
cggtgttctttatacacagcaggtagttttttagaaggtaaatcaggtacagcgattaat
gggtttatccgattgatagattacatgcgtgattcaactaaaaacaataccttgccagag
ttaattgattttgttttacaacattgtggcttgatacagcattacttgactgaaaaagaa
ggtcaggaccgaattgaaaacttacaagaattaatcaacgccgcaactgcgtttattgct
gaagaagggattggtcaagatacaaaagcactaactccgatggagtttaatactagtatt
ccagttgaacccttatttgaaaatcaaagcatcaatcaaaccatttcagaaatgtcacca
ctcgcagcatttttatcgcatgcctcactagaggcgggagataatcaagcgcaagctgga
caagaagcagtgcaactaatgacagtccatgcctcgaaaggtttggagtttaaagcggta
tttattacaggccttgaagagggtttatttccgcatgaaaatagcttaaatgaggataaa
ggactagaagaggagaggcgattaatgtacgtcgccattactcgagcgagagatcgccta
tatatttctcatacgcaatcacggatgttgcatggtcaagtgagatacaacttaccctca
cgttttatagaagagttacctaaagagagtgttaaattactgacacccaagcaaaaagac
tctgtatggtcatcacattctaggcaggtcaatcctagttggggtcaggctagtcttggg
gatgatcgtcgaagcacttcacacaatgcatcttcaattttagttagtcatacccgagcg
aaagatgagcatggttttcatgttggtcaaaatgtattccatagtaaatttggtgaaggt
cgcattcttaattttgaaggaaatggtacagacaccaaagtacaagttagttttgccagg
catggaacgaagtggttgcaattgagtattgcaaaactatcggcaatttag
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