Polynucleobacter sp. SHI2: PSHI2_20310
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Entry
PSHI2_20310 CDS
T10386
Symbol
pcnB
Name
(GenBank) poly(A) polymerase I
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
poly Polynucleobacter sp. SHI2
Pathway
poly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSHI2_20310 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poly03019
]
PSHI2_20310 (pcnB)
Enzymes [BR:
poly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
PSHI2_20310 (pcnB)
Messenger RNA biogenesis [BR:
poly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PSHI2_20310 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
BDW11949
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All DBs
Position
2074094..2075506
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AA seq
470 aa
AA seq
DB search
MIQKIIRRILGKKPSSTSRTPKNKAAKEIGFQDHQINQDHISKNAIKVTQALQHAGYEAF
IVGGAVRDLILGIVPKDFDVATNATPDQVQAVFRKSRLIGRRFQIVHVTFYGGHKPEIIE
VSTFRAMVNDEGEHITESGRILRDNIWGSHSEDAARRDFTINALYYNPSNSVVLDYHGGM
YDMKERLIRMIGDSEKRYREDPIRMLRAVRFAAKTGFAIEAKTLAPIQELAPLIHDVPSA
RLFDEILKLLMSGHAWASLEALRDVGLGQGLLPMIDAIFEQDKLSHFAKIALARTDERVQ
LGKPISPGFLFATLLWHQVDLGWQNELHTGKPLIPALHAAIDSVLANQRETFAIQRRFET
DMREIWSLQPRFEKRSGKMPYRLLESPRFRAGYDFLCLRCLAGELPSSLSQWWEDFQVAD
LPEREKLLLSAKEESPLNSSSTPGKSRRRRRRAPKNQGDEIKILDPEQAS
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgattcaaaagatcatacgtcgtattttaggtaaaaaaccttcatcgacttcacgtacc
cctaaaaacaaggctgctaaagagattggcttccaagatcatcagatcaatcaagatcat
atttctaaaaatgcaatcaaagtaactcaagcactccaacatgctggatatgaagctttt
atcgtaggtggtgcagttcgcgacttaatactcggaattgttccgaaagattttgatgtt
gctacaaatgccacacccgatcaagtccaagctgtattcagaaaatcacgcttaattggg
cgacgatttcaaattgttcatgtcactttttatggcggccataaaccggaaattattgaa
gtgtctacatttcgggcaatggtcaatgacgaaggtgaacatattactgaaagtggtcga
attttacgcgataacatctggggctcacactcagaagatgctgcgagacgtgactttacg
atcaatgctctatattacaaccctagtaatagcgtagttcttgattatcatggcggcatg
tatgacatgaaagaacgcctcatacgtatgattggggattcagaaaagcgttatcgcgaa
gatccgatccggatgctcagggcggtacgttttgctgcaaagacaggttttgctattgag
gccaagactttagctccaattcaagagttagctccattgattcatgatgtccctagtgca
cgactctttgatgaaatattaaagcttttaatgtcaggacatgcttgggcatctcttgaa
gcattgcgagatgttggcttgggacaagggctattgcccatgattgatgctatttttgag
caggacaagctcagtcattttgccaaaatagcgcttgccagaactgatgaaagagtacaa
ctgggcaaaccaatctccccaggctttttatttgccacattgctttggcatcaagttgac
cttggctggcaaaatgaactgcatacgggtaaaccccttatcccggctttacatgcagca
attgactccgtgttagcaaatcagcgcgagacttttgccatccaaagaagattcgaaaca
gatatgcgtgaaatttggagtctacaacctagattcgaaaaaagaagtgggaaaatgcca
tatcgactgctggagtcacctcgcttcagagcaggttatgattttttatgtttgcgatgc
ttggctggtgaactcccttcatctctttctcaatggtgggaggattttcaagtagcggat
ttaccagaacgtgaaaaattgttattaagcgccaaagaagaatccccactaaattcttca
agtactcctggaaagtctcgtcgaaggaggcgcagagcccctaaaaatcaaggtgatgag
atcaaaatccttgatcctgagcaagcttcctaa
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