Polynucleobacter sp. SHI2: PSHI2_20730
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Entry
PSHI2_20730 CDS
T10386
Symbol
groL
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
poly Polynucleobacter sp. SHI2
Pathway
poly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSHI2_20730 (groL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
poly03019
]
PSHI2_20730 (groL)
03110 Chaperones and folding catalysts [BR:
poly03110
]
PSHI2_20730 (groL)
03029 Mitochondrial biogenesis [BR:
poly03029
]
PSHI2_20730 (groL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
poly04147
]
PSHI2_20730 (groL)
Enzymes [BR:
poly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
PSHI2_20730 (groL)
Messenger RNA biogenesis [BR:
poly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
PSHI2_20730 (groL)
Chaperones and folding catalysts [BR:
poly03110
]
Heat shock proteins
HSP60 / Chaperonin
PSHI2_20730 (groL)
Mitochondrial biogenesis [BR:
poly03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
PSHI2_20730 (groL)
Exosome [BR:
poly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
PSHI2_20730 (groL)
Exosomal proteins of other body fluids (saliva and urine)
PSHI2_20730 (groL)
Exosomal proteins of breast cancer cells
PSHI2_20730 (groL)
Exosomal proteins of colorectal cancer cells
PSHI2_20730 (groL)
Exosomal proteins of bladder cancer cells
PSHI2_20730 (groL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
BDW11991
LinkDB
All DBs
Position
complement(2126467..2128116)
Genome browser
AA seq
549 aa
AA seq
DB search
MAAKDVVFGDSARARMVEGVNILANAVKVTLGPKGRNVVLERSFGGPMVTKDGVSVAKEI
ELKDKLQNMGAQMVKEVASKTADDAGDGTTTATVLAQSIVREGMKYVVAGHNPMDLKRGI
DKAVTAALAEISKLSKPCTTTKEIAQVGSISANSDTSIGDRIAEAMERVGKEGVITVEDG
KSLADELDVVEGMQFDRGYLSPYFINNPEKQVVILENPFILLFDKKISNIRDLLPVLEQV
AKSGRPLLIIAEDVEGEALATLVVNNIRGILKTCAVKAPGFGDRRKAMLEDIAVLTKGQV
IAEEVGLTLEKVTLDDLGQAKRVEIGKENTTIIDGNGDEKQIEARVKMIRAQIEEATSDY
DREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVDDALHATRAAVEEGIVPGGGVALV
RAKQAILTLKGDNADQNAGIGIVLRAMEEPLRVIVTNAGDEASVVINQVASGTGNYGYNA
ATGEYGDLVEQGVIDPAKVTKTALVNAASVAGLLLTTDCAISESPKEDGPSMPGGMGDMG
GMGGMGGMM
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaaagatgtagtattcggagattcagcacgtgcacgtatggttgagggtgta
aatatcctcgcgaatgcagttaaagtaactttaggacctaaaggtcgtaacgttgtttta
gagcgttcatttggtggcccaatggtgactaaagacggtgtatctgtagccaaagaaatc
gaactcaaagacaagctccaaaatatgggcgctcagatggttaaagaagttgcatctaaa
acagcggatgacgctggtgacggtacaacaacagcaactgttcttgcacaatcaatcgta
cgtgaaggtatgaaatatgttgttgcgggtcacaacccgatggacctcaagcgtggtatt
gataaggcagtgactgcagcgttagctgaaatctctaagttaagcaagccttgcacaaca
acaaaagaaatcgctcaagttggttctatttcagcgaactctgatacaagtattggcgat
cgtattgctgaagcaatggagcgtgttggtaaggaaggcgtaattactgtagaagatggt
aagtcacttgctgatgaattagatgttgttgaaggtatgcagtttgaccgtggatattta
tcaccatacttcattaacaatccagaaaaacaagtagttattctcgaaaacccattcatc
ttgttatttgacaaaaagatcagcaatattcgtgatttgttgccagtactcgagcaagtt
gcaaaatctggtcgtccactcttgatcatcgcggaagatgttgaaggtgaagcactagca
actttagtagtgaacaacattcgcggaatcctcaaaacttgtgctgttaaagctcctggt
tttggtgatcgtcgtaaagcaatgttggaagatattgctgtattgactaaaggacaagtg
attgctgaagaagttggcttaacacttgagaaagtaactcttgatgacttaggtcaagct
aagcgtgttgaaatcggtaaagaaaacacaaccatcattgatggtaacggtgatgaaaag
caaattgaagcacgtgtaaagatgattcgtgcacaaattgaagaagcgactagcgattat
gatcgtgaaaaactccaagagcgtgtagctaagcttgcaggtggtgttgctgtaattcgt
gttggtgcagctactgaagtagaaatgaaagagaaaaaagcgcgtgtggatgatgcattg
catgcaactcgtgctgctgtagaagaaggtattgttcctggcggtggtgtggctttagta
agagcaaaacaagctattctcacattgaaaggtgacaatgcagaccaaaacgctggtatt
ggtatcgttttacgtgctatggaagagccattacgcgtaatcgtaacgaatgctggagat
gaggcgagtgtagtaattaatcaagttgcttcaggaactggtaactatggttacaacgct
gctactggtgagtatggcgatctcgttgaacaaggtgtgattgatccagctaaagtaact
aaaacagcattagtaaatgctgcctcagttgctggcttattgctcacaacagattgtgca
attagtgaatcaccaaaagaggatggcccttcaatgcctggtggtatgggcgatatgggt
ggtatgggcggtatgggcggcatgatgtaa
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