Polynucleobacter sp. SHI2: PSHI2_22090
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Entry
PSHI2_22090 CDS
T10386
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
poly Polynucleobacter sp. SHI2
Pathway
poly03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSHI2_22090 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
poly03400
]
PSHI2_22090 (mutM)
Enzymes [BR:
poly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PSHI2_22090 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PSHI2_22090 (mutM)
DNA repair and recombination proteins [BR:
poly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PSHI2_22090 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
C1_2
DUF5817
Motif
Other DBs
NCBI-ProteinID:
BDW12127
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Position
complement(2259231..2260064)
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AA seq
277 aa
AA seq
DB search
MPELPEVEVTRQGISPQIKGKTITKVIVHDGRLRWPVPHHLEKILLGQPCIDIRRRGKYL
LFEFSHGVMLLHLGMTGVLRIHKVEEAPKKYNRVEFHFGKLALRLHDPRKFGSIHWHPKE
DGPVESFPLLTKLGVEPFEPEFSGELGGELLYKKSRGRTISVKQYLLAGQVVVGVGNIYC
SESLFEAKINPKKAAGKISKQGYARLAQAVRLILEKAIRAGGSSLKDFVHSDGEPGHFMV
LTNVYDRAGMPCNACQTSIKQIVQGQRSTYFCPVCQK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattaccagaagttgaagtgactaggcaagggatctcgccacaaattaaggga
aaaacaattacaaaagtaattgttcatgatggtcgcttgaggtggccagtcccgcatcat
ttggaaaaaatacttttaggtcaaccttgtatagatattaggcggcgtggaaaatattta
ttatttgagttcagtcatggggtgatgctattgcatttagggatgactggggtattacgt
atccacaaagtagaagaagctcctaaaaaatataatcgggttgagtttcattttggaaaa
ttagctttacgcttacatgacccaagaaaatttggttcgatacactggcatcctaaagaa
gatggtccagtggagagtttccctttattaactaaattaggggtagagccatttgaacca
gaattttcaggtgagctaggtggagaattgttatataaaaaatctcgtggaagaacgata
tcagtaaagcaatatcttttagcaggtcaggttgtcgtaggagttggcaacatttactgt
tcagagagtctgtttgaggcaaaaataaatcccaaaaaagccgcaggcaagatttctaag
caaggatatgctagattggctcaagctgtgcgcttgatccttgaaaaagcgattagggca
ggtggcagtagtttaaaagactttgtacacagtgatggtgagccaggacactttatggtt
ttaaccaatgtgtatgatcgtgctggaatgccatgtaatgcttgtcaaacttcgatcaaa
caaattgtccaaggccaacgatcaacatatttttgtcctgtttgtcaaaagtga
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