Polynucleobacter sp. SHI2: PSHI2_23230
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Entry
PSHI2_23230 CDS
T10386
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-alpha
KO
K03530
DNA-binding protein HU-beta
Organism
poly Polynucleobacter sp. SHI2
Brite
KEGG Orthology (KO) [BR:
poly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
poly03032
]
PSHI2_23230 (hupB)
03036 Chromosome and associated proteins [BR:
poly03036
]
PSHI2_23230 (hupB)
03400 DNA repair and recombination proteins [BR:
poly03400
]
PSHI2_23230 (hupB)
DNA replication proteins [BR:
poly03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PSHI2_23230 (hupB)
Chromosome and associated proteins [BR:
poly03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PSHI2_23230 (hupB)
DNA repair and recombination proteins [BR:
poly03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PSHI2_23230 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
UBA_HYPK
Activator-TraM
DUF2267
Motif
Other DBs
NCBI-ProteinID:
BDW12241
LinkDB
All DBs
Position
complement(2366625..2366909)
Genome browser
AA seq
94 aa
AA seq
DB search
MNKAELVAAIADESELSKAKAEHALNAALDTIKKAVTKGDNVQLIGFGTFSSGKRAARVG
RNPKTGEAIKIAASKTVKFSAGKAFKDSVNKRKK
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaagcagaactcgttgcagctattgctgacgaatcagaattatctaaagctaaa
gcagagcacgcattaaatgctgcattagatacaattaaaaaagctgttactaaaggcgat
aacgttcagttaatcggttttggtacatttagttcaggaaagcgcgctgctcgtgttggc
cgtaatcctaagactggtgaagcgatcaaaattgcagcatcaaaaacagttaaattttct
gctggtaaagcatttaaagatagcgtaaataagcgtaagaagtaa
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