Polaribacter sp. MED152: MED152_01675
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Entry
MED152_01675 CDS
T02533
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pom
Polaribacter sp. MED152
Pathway
pom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MED152_01675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pom03019
]
MED152_01675
03009 Ribosome biogenesis [BR:
pom03009
]
MED152_01675
Enzymes [BR:
pom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MED152_01675
Messenger RNA biogenesis [BR:
pom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MED152_01675
Ribosome biogenesis [BR:
pom03009
]
Prokaryotic type
rRNA helicases
MED152_01675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RecG_N
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
EAQ41383
UniProt:
A2U2E0
LinkDB
All DBs
Position
complement(361518..363338)
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AA seq
606 aa
AA seq
DB search
MSTFKEIGLKAPIIKALTDLGYEKPTVIQEKAIPQIISSDTDLKAFAQTGTGKTAAFSLP
ILELLEEDNNNVQAIILSPTRELAVQIGNNIKDFCKYLKNVKVTTVYGGSSMEDQIRSLK
KGSQIVVGTPGRTVDLINRRALKLGNVRWLVLDEADEMLNMGFKEELDKVLEATPETKQT
LLFSATFPREVEAIARNYMTTPVEVTSGEKNSGSENVSHEYYAVTERTRYPALKRIADLN
PDIYAIIFCRTRRETQEVADNLIKDGYNADSLHGDLSQAQRDSVMGKFRKKTIQILVATD
VAARGLDVTELTHVINHKLPDQIENYTHRSGRTGRAGNKGVSIVLVNNREKGKLRVIERI
IKQKFVEGKVPTGKEIVENQLMNLIDKVNDTKVNESEIKEFLPSIYDKLKDLDREELIQK
FVSLEFNTMLAYYENSKDLNDLGRENSRARATADNMTRFFINIGRKDSLNPAKLIGLIND
QNIGDKIEIGAIDILDTFSFFEIDKNFESETLDAFASNQPDFDGRSVNVEITKKERSGGG
RRGKKKSFGKKDGGFGRRRSAEGSSSRRSSDNGGGRNRGDRSDRRSSSSSRSDRKPGGFG
RKRRDS
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatttaaagaaatagggctaaaagcacctatcatcaaagcattaacagattta
ggttacgaaaaaccaactgttattcaagaaaaagcaattccacaaataatatcttctgat
acagatttaaaagcatttgctcaaacaggtacaggtaaaactgcagcatttagtttacct
attttagaacttttagaagaagataataacaatgttcaagccattatattatcgccaaca
agagaacttgcagttcagattggtaataatattaaagatttttgcaaatatttaaaaaat
gtaaaagtaacaacggtttatggtggttctagcatggaagatcaaataagatctttaaag
aaaggatctcaaattgttgtaggtactccaggtagaactgtagatttaattaatagaaga
gcattaaagttaggcaatgttagatggctggttttagatgaagctgacgaaatgctaaac
atgggctttaaggaagaactagacaaagttttagaagctacaccagaaaccaaacaaacc
ttactattttctgcaacgtttcctagagaagtagaagctattgctagaaattatatgact
actcctgtagaagtaacttctggagaaaagaattctggttcagaaaacgttagtcatgaa
tattatgcagtaacagaaagaacacgttaccctgctttaaagagaatagcagatttaaat
cctgatatttatgcaattatcttctgtagaactcgaagagagactcaagaagttgcagat
aatttaattaaggatggctataatgcagattctctacatggagatttatctcaagcacag
agagattctgttatggggaaattcagaaagaaaaccattcaaatcttagtagcaacagat
gttgcagcacgtggtttagatgtaactgaattaactcatgtaattaaccataaattacca
gaccaaatagaaaattacacacatagaagtggtagaactggtagagctggtaacaaaggt
gtatctattgttttagtaaataatagagaaaaagggaaattacgtgttatagaacgtatc
ataaaacaaaaatttgttgaaggtaaagtacctacaggaaaagaaattgtagaaaatcaa
ttaatgaatttaattgataaagtaaatgatacaaaggttaatgagtctgaaattaaagag
tttttacctagcatttacgataagttaaaagatttagacagagaagaattaatacaaaag
tttgtttctttagagttcaacacaatgttggcttactatgaaaactctaaagacttgaat
gatttaggtagagagaattctagagctagagcaactgcagataatatgactcgttttttc
atcaatattggtagaaaagacagtttgaatcctgccaaattaattggtttaattaacgac
cagaatattggtgataagatagaaattggagctatagatattctagatacgttttctttc
tttgaaattgataagaattttgagagtgaaaccttagatgcttttgcttctaatcagcca
gattttgatggtagatctgtaaacgtagaaattacaaaaaaagaacgttcaggaggagga
agaagaggaaaaaagaaatcttttggtaaaaaagatggaggttttggacgaagaagaagt
gctgaaggttcatcatctagaagaagttctgataatggtggaggaagaaatagaggtgat
agaagtgatagaagatcttcttcatctagcagatctgacagaaaacctggaggatttgga
agaaaaagaagagattcttaa
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