Polaribacter sp. MED152: MED152_02405
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Entry
MED152_02405 CDS
T02533
Name
(GenBank) DEAD/DEAH box helicase
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pom
Polaribacter sp. MED152
Pathway
pom03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MED152_02405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pom03400
]
MED152_02405
Enzymes [BR:
pom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MED152_02405
DNA repair and recombination proteins [BR:
pom03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MED152_02405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PriA_3primeBD
ResIII
Zn_ribbon_PriA
Helicase_C
PriA_C
nSTAND3
Nrap_D6
Cript
AAA_30
TrmB
AAA_19
NPHP3_N
CPL
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
EAQ41529
UniProt:
A2U1Z2
LinkDB
All DBs
Position
complement(514250..516598)
Genome browser
AA seq
782 aa
AA seq
DB search
MRVAVSFGNKNMYTGLVFSIHTKKPTLYDTTDIIQILDEKPIVNELQLKHWQWIANYYMC
SLGDVYRAALPSAFLLESETSISKNEGFINEDILEDEEFLIYEALQHQSQLTIHQVADIL
GKKKVMPIVNELIKKSAIFIQEKIYEQYKPKLVKYVRLHSDYTSDDSLNSLLEELSRAKK
QREAVLTFFQLTTSKKPIKAKDLEVKASVSAAVLKSLVEKNILEFYEIQTDRISFKGESN
ALKSLNEFQEKAYSEINESFKNKDVTLLHGITSSGKTEIYTKLIQNVLDEGKQVLFLLPE
IALTTQIIKRLQIYFGEQISVFHSKYTVNERVEVWNNLLNKKSKAQIILGARSSVFLPFS
NLGLIVVDEEHETSYKQFEPSPRYNARDSAIVLAKMHNAKILLGSATPSLESYFNAKQNK
YGFVELNRRFGNLQLPKIELIDVKDKHKKKEMKGHFSDRLLKLIQEALDEKEQVILFQNR
RGYSPIVECKTCGVAPQCPNCDVSLTFHKYRNELRCHYCSYQRSMPNSCSACGSNTLDTK
GFGTEQIELELKELFPDFKVGRMDLDTTRGKFGYQKIIGAFEAREIDILVGTQMLSKGLD
FDNVSLVGILNADTMLNFPDFRAHERAYQMMVQVSGRAGRSKKQGNVAIQTYNPYHQILQ
QVSTTNYTEMYKEQLQERWQYKYPPYYRLIKITLKHRDYNKVDTGVNWLFKALYSSFGEH
VLGPTAPAVSRIRNQYIKNIVIKIPPKQSLANTKQQVAKIKNTFEAVKEFRPIRFIADVD
AY
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgagagtagcagtatcttttggtaataaaaatatgtatacaggtttagtgtttagcata
catactaaaaagcctactttatatgatactacagatattattcaaatattagatgagaaa
cctatagttaatgaattacaacttaaacattggcaatggattgccaattactatatgtgt
tctttgggagatgtttatagagctgcattaccatctgcttttttattagaaagtgaaact
agtatttctaaaaatgaaggttttataaacgaagatattttagaggacgaagaattttta
atttatgaggctttacaacatcaatctcaactcacaattcatcaagtagcagatatttta
ggtaagaaaaaggtgatgcctattgttaatgaacttattaaaaaatcagcaatattcatt
caagaaaaaatctacgaacaatacaaaccaaaattggtaaaatatgttcgcttgcattca
gattatacttctgatgattcattgaactcattattagaagaattatctagagctaaaaaa
caaagagaagctgtattaacatttttccaattaaccacttctaaaaaacccattaaagct
aaagatctagaagtaaaagcaagtgtttctgctgcagttttaaaatctctagtagaaaaa
aacatccttgagttctacgaaatacaaacagatagaataagttttaaaggtgaatctaat
gctttaaaaagtttgaatgaatttcaagaaaaagcatactccgaaattaatgagagtttt
aaaaataaggatgtaacgcttttgcatggaataacaagttcgggtaaaacagaaatatat
accaaattaattcagaatgttttagatgaaggtaaacaagtattgtttttgttaccagaa
atagccttaaccactcaaattattaaaaggttacaaatttatttcggagaacaaatttct
gtttttcactctaaatatactgttaatgaaagagtagaagtatggaataacttgcttaac
aaaaaatcaaaagcacagattattttaggtgcaagatcatccgtttttttacccttttct
aatttgggtttgattgtggtagatgaagaacatgaaacctcttataagcaatttgaacct
tcaccaagatataatgctagagattctgccattgttttggcaaagatgcacaatgctaaa
attttattaggttctgcaactccgtctttagaaagttattttaatgccaaacaaaataaa
tatggttttgttgaattaaataggcgttttggaaatttacagttgccaaaaattgaattg
atcgatgtaaaagacaagcataagaaaaaagaaatgaaaggtcatttctcagatcgattg
ttaaaattaattcaagaagctttagatgaaaaagagcaggtcattttatttcaaaatagg
cgaggttactcacctatagtagaatgtaaaacttgtggggttgctcctcagtgccctaat
tgtgatgtaagtttaacttttcataaatatagaaatgagttgcgttgtcactattgcagt
tatcaaagatcaatgccaaattcatgttcggcttgtggtagtaatacattagatacaaaa
gggtttggaacagaacaaatagaactagaacttaaagaattgtttccagactttaaagtt
ggtagaatggatttagataccactcgtggtaaatttggttatcaaaaaattataggagct
tttgaagctcgagaaatagatattttggtgggtacacaaatgctatctaaaggtttagat
tttgataatgtttctcttgttggtattttaaatgctgataccatgcttaatttcccagat
tttagagctcatgaaagagcttaccaaatgatggtacaagtttctggtagagcaggtaga
agtaaaaaacaaggtaatgttgccattcaaacctataatccataccatcaaatactgcaa
caggtatctacaacaaattatacagaaatgtataaggaacaattgcaagaacgttggcag
tataaatatccaccttattatagacttataaaaataactctaaaacatagagattataat
aaagtagatactggagtaaattggttatttaaagctttgtattcttcatttggtgaacat
gtattaggcccaacagcaccagcagtatctagaatacgaaatcaatatattaaaaacatt
gttataaaaattccgccaaaacaaagtttagcgaacactaaacagcaagtggctaaaatc
aaaaatacttttgaagctgtaaaagaatttagaccaattcgatttattgcagacgtagat
gcttactaa
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