Polaribacter sp. MED152: MED152_04805
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Entry
MED152_04805 CDS
T02533
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pom
Polaribacter sp. MED152
Pathway
pom03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pom00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MED152_04805 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pom03021
]
MED152_04805 (rpoC)
03400 DNA repair and recombination proteins [BR:
pom03400
]
MED152_04805 (rpoC)
Enzymes [BR:
pom01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MED152_04805 (rpoC)
Transcription machinery [BR:
pom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MED152_04805 (rpoC)
DNA repair and recombination proteins [BR:
pom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MED152_04805 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Nha1_C
Motif
Other DBs
NCBI-ProteinID:
EAQ42009
UniProt:
A2U0L2
LinkDB
All DBs
Position
complement(1063113..1067384)
Genome browser
AA seq
1423 aa
AA seq
DB search
MARKQEKYTVKKFNKISIGLSSPEAILEVSKGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKM
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNVEGEPLQKMDFLTEEEYLDIVDELPQENQY
LDDSDPNKFIAKMGAECLIDLLARIDLDELSFQLRHKANTETSKQRKTEALKRLNVVEAF
RDSQKNRENNPEWMIMKAIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLSECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACSAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPVTVPSQDMVLGLYYMTKERISTPEM
PIKGEGLTFYSPEEVTIAFNEEKVDLNASIKVRTQDIENGEQVTKIIKTTVGRVLFNEKV
PAAAGYINEVLTKKNLRGIIGGILKATDIPTTGAFLDEIKNMGYKFAFQGGLSFSLGDII
IPKEKQAMIDEANKEVDGIVGNYNMGMLTQKERYNQVIDVWGSTNNRLTELSMKNLREDQ
QGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSIL
EYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINEEDCGTLRGLEVAPLKKNDE
IVESLSDRIEGRISLNDVYHPVTEELLLEANQSITSQLADAVQASGIDSVEVRSALTCES
SRGICAKCYGLSLSTRNKVQIGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGNISEENKL
IAKFDGKVVIDDLRTVVGKDNEGNEVDIVISRTAEIKIIDKKTDITQSTNILPYGSIIFD
KDRKSIKKGDVIVQWDPFNGVIVSEFNGRVKFDNLEQGMNYAVEIDEQTGFQEKVITDSK
NKKIIASLIIEDEDGNALRSYSLPVGAHLMVDDGDVVESGKTLVKIPRKSGKAGDITGGL
PRVTELFEARNPSNPSVVSEIDGVVSFGKIKRGNREIIVESKTGEISKYLVKLSNQILVQ
ENDFIKAGMPLSDGATTPSDILRIKGPSAVQEYLVNEIQEVYRLQGVKINDKHFEVVVRQ
MMRKVKIIDSGDTLFLENQLIHKNDFIEENDAIYGMKVVEDAGDSENLKPGQIITARQLR
DENSLLRRNDNNLVTARDARPATAEQVLQGITRASLQTKSFISAASFQETTKVLNEAAVN
GKIDTLEGLKENVIVGKKIPAGTGMRSYDKVIVGPKDEIEQSF
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaacaagaaaagtacactgtaaaaaagtttaacaaaatctcaattggttta
tcatcaccagaagctattttagaagtttctaaaggtgaagttttaaagccagagactata
aattatcgtacacacaaaccagaaagagatggtttattctgtgagcgtatttttggtcct
gttaaggattatgaatgtgcctgtggaaagtacaaaagaattcgttacaaaggtattgtt
tgtgatagatgtggtgtagaagttacagaaaagaaagtacgtagagatagagttgggcat
atcaatttggtagtgcctgttgctcatatttggtactttagatcattacctaacaaaatg
ggttaccttttaggtttaccttctaaaaagttagatatgattatttactacgaaagatac
gtagtaattcaaccaggtattgcaaaaaatgtggaaggagagccattacaaaaaatggat
ttcttaactgaagaagaatatttagatattgttgatgagttaccacaagaaaatcaatat
ttagacgattcagatccaaacaagtttatcgctaaaatgggtgctgaatgtttaattgat
ttattagctagaattgatttagatgaattatcatttcaattaagacataaagcaaatact
gaaacttctaagcaaagaaaaacagaagctttaaagcgtttaaacgttgttgaagcattt
agagattctcaaaagaatagagaaaataatccagagtggatgattatgaaggcaattccg
gttataccaccagaattaagacctttagttccattagatggaggacgttttgcaacttca
gatttaaatgatttatacagaagagttattattagaaacaatcgtttaaaaagattggtt
gaaataaaagctccagaagttattttacgtaatgaaaaacgtatgttacaagaatcagta
gattcattatttgataacacacgtaaatcatcagcagtaaaaactgaatctaacagacct
ttaaaatctttatcagattcattaaaaggtaaacaaggtcgtttccgtcaaaacttactg
ggtaagcgtgttgattattctgcacgttctgtaattgttgttggaccagaaatgaaattg
tctgaatgtggattgccaaaagatatggcagctgaactttacaagccatttgtaattaga
aaactaattgaaagaggaattgtaaaaacagttaaatctgcaaagaaaattattgataga
aaagaaccagttgtttgggatattttagagaacgtaattaaaggtcacccagtattatta
aacagggctcctactttacacagactaggtattcaagctttccaaccaaaattaattgaa
ggtaaagctatacaattacacccattagcatgttctgcatttaatgcggattttgatgga
gatcaaatggctgttcacttaccattaggaccagaagctattttagaagcacaattatta
atgttggcttctcataatatcttaaaccctgcaaatggtgctccagtaactgtaccttct
caggatatggtacttggattatattacatgaccaaagaaagaatatctactccagaaatg
ccaattaaaggagagggcttaactttctattctccagaagaagttacaatagctttcaat
gaagaaaaagtagatttaaatgcatctattaaagttagaactcaagatattgaaaatgga
gagcaagtaactaagattataaaaactactgtaggtagagttttatttaatgaaaaagtt
cctgctgcagctggatatataaatgaagttttaactaagaaaaacttacgtggaattatt
ggtggtattttaaaagctacagatattcctacaacaggtgctttcttagatgaaattaaa
aatatgggttataagtttgcattccaaggtggattgtctttctcattaggtgatattatt
attcctaaagaaaagcaagccatgattgatgaagcaaacaaagaagtagatggtattgta
ggtaactataatatgggtatgttaacgcagaaagagcgttacaatcaggtaattgatgtt
tggggttctaccaacaacagattaactgaattgtctatgaaaaatttacgtgaagaccaa
caaggattcaactcagtatatatgatgcttgattctggagctcgtggatctaaagaacag
attcgtcagttaacaggtatgcgtggattaatggcaaaaccgaaaaaatctactgctgga
ggtggagaaattatcgagaacccaattctttctaactttaaagaaggtttatcaattctt
gaatactttatctcaactcacggtgctcgtaaaggattagcagataccgctttaaaaacg
gcagatgctggttacttaacacgtagattagtagatgtatctcaagacgttattattaac
gaagaagattgtggtacattaagaggtttagaagttgctccattaaagaaaaacgatgag
attgtagagtctttatcagacagaattgaaggtcgtatttctttaaacgatgtttatcac
ccagttacagaagaattattattagaagcaaatcaatctattacttctcaattagcagat
gctgtacaagcatcaggtattgattctgtagaagtaagatctgcattaacttgtgaatct
tctagaggtatttgtgcaaaatgttatggtttaagtttatcaacgcgtaacaaagtacaa
attggtgaggcagttggtgtaattgcagcacaatctattggagagccaggtacacagtta
acattacgtacattccacgttggtggggttgcaggtaacatatcagaagagaataagtta
attgccaaatttgatggtaaagttgttatcgatgatttaagaactgtagttggtaaagat
aatgaaggtaatgaagtagatatcgtaatttcgagaactgctgaaattaaaattattgat
aagaaaactgatatcactcagagtacaaatattttaccttatggttctatcatttttgat
aaagatagaaaatcaatcaaaaaaggagatgttattgtacaatgggatccatttaatggt
gtaattgtttctgagtttaatggtagagttaagttcgacaatttagagcaaggtatgaac
tatgctgtagaaattgatgaacaaacaggtttccaagaaaaagtaattacagattctaag
aacaaaaaaatcattgcatctttaattattgaagatgaagatggtaatgcattacgttct
tacagtttaccagtaggtgctcacttaatggttgatgatggagatgttgtagaaagtgga
aaaacattagttaaaattcctagaaaatctggtaaagcaggtgatattacaggaggttta
ccacgtgtaacagaattatttgaagcacgtaatccttctaacccatctgtagtttcagaa
attgatggtgttgtttctttcggaaaaattaaaagaggtaatagagaaattattgttgag
tctaaaacaggtgagattagcaaatatttagtaaagctttctaatcaaattttagttcaa
gaaaatgactttatcaaagctggtatgccattatctgatggtgctactacaccttctgat
attttaagaattaaagggccatctgcagtacaagaatacttagtaaatgaaatacaagaa
gtatatcgtttacaaggtgtgaaaattaacgacaaacattttgaagttgttgttcgtcaa
atgatgcgtaaagttaaaattatagattcaggagatactcttttcttagagaatcaattg
attcacaagaatgactttattgaagaaaacgatgcaatttacggaatgaaagttgttgaa
gatgctggagattctgagaatttaaagccaggtcaaataatcactgcacgtcaattaaga
gatgagaattctttattaagaagaaatgacaataacttagttactgcaagagatgcaaga
ccagcaacagcagaacaagtattacaaggtattacaagagcatctttacaaacgaaatca
tttatttctgcggcttctttccaagaaactacaaaagtattaaatgaggcagctgtaaat
ggtaaaatagatactttagaaggattgaaagagaatgtaattgtaggtaagaaaatacca
gcaggtacaggaatgagatcttatgataaagtaattgttggaccaaaagatgaaatagaa
caaagtttctaa
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