Polaribacter sp. MED152: MED152_08085
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Entry
MED152_08085 CDS
T02533
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pom
Polaribacter sp. MED152
Pathway
pom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MED152_08085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pom03019
]
MED152_08085
Enzymes [BR:
pom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MED152_08085
Messenger RNA biogenesis [BR:
pom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MED152_08085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
EAQ42665
LinkDB
All DBs
Position
complement(1831259..1832575)
Genome browser
AA seq
438 aa
AA seq
DB search
MSFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVL
QYLSETKHPKYRPIRALVLTPTRELAAQVHDNVREYSKYVNIKSAVVFGGVKAASQIATL
KRGVDILVATPGRLLDLHDQKAVSFKRIDVFILDEADRMLDMGFVRDINKIISYMPAKRQ
NLMFSATFSKEIKKLASGILKNPVEVETAPQNSTAKKVSHKVYQIDKKKKTEFTIKLIKD
NNWNQVLIFTRTKHGANRLTQNLIKSKISAAAIHGNKSQGARTKALKNFKDNTIKVLVAT
DIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGAKGEAISLVCSEETEYQKEIEK
LLNEKLTSIVVEGFEPTDTAAPKRAASQSKGSFNKKKKTTQGKSDTPKKAKRTNNYKRRK
PANNSGRGRSGAAKSKRN
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaatcattaggcttatcagatgcttttgtaaaagcagtggaagaaaaagga
tatacaaagccatctccaatacaagaaaaagcaatacctcatatcttagaaggtaaagat
gtgttagcttctgcacaaacaggtacaggtaaaacagcaggttttacactaccagttttg
caatatttatcagaaacgaaacacccaaaatataggccaattagagctttggttttaaca
ccaactagagaattggctgctcaagtgcatgataatgttagagaatatagcaaatatgta
aatataaaatctgcagtggtttttggaggtgtaaaagcagcttctcaaattgcaacctta
aaaaggggtgtagatatactagtggcaacaccaggaagattacttgatttacatgaccaa
aaagcagtttcatttaaacgaattgacgtttttatcttagatgaagcagacagaatgtta
gatatgggttttgttagagacattaacaaaattattagttatatgcctgcaaaacgtcaa
aacttgatgttttctgctacgttttctaaagaaattaaaaagctagctagtggtattcta
aaaaatcctgtagaagtagaaactgcaccccaaaattctaccgctaaaaaagtatcgcat
aaagtttatcaaattgataaaaagaagaaaactgaattcacaataaagttgattaaagac
aataattggaatcaggttttaatttttacaagaaccaaacatggagcaaatagattaact
cagaatttaattaaatctaaaatttctgcagcagctattcatggtaataaaagtcagggt
gctagaacaaaagcgttaaaaaactttaaagacaataccattaaagttttggtggctaca
gatattgcagctcgtggtttagacatacctttattgccttatgtaataaattatgagttg
ccaaatgtacccgaagattatgtacatagaattggtagaactggtagagcaggtgcaaaa
ggtgaagccatttcattagtttgtagtgaagaaacagaatatcaaaaagaaattgaaaaa
ttattgaatgagaaattaacatcgatagttgtagaaggttttgaacctacagatacagca
gctccaaaaagagcagcttctcaaagtaaaggttcatttaacaaaaagaaaaaaactaca
caaggcaaatcagatacacctaaaaaagcgaaaagaactaacaattataagcgaagaaaa
cccgcaaataattcaggaagaggtagaagtggtgcagccaaaagtaaacgaaactag
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