Pongo abelii (Sumatran orangutan): 100173406
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Entry
100173406 CDS
T01416
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pon
Pongo abelii (Sumatran orangutan)
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pon03041
]
100173406 (YTHDC2)
Enzymes [BR:
pon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100173406 (YTHDC2)
Spliceosome [BR:
pon03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100173406 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
ABC_tran
T2SSE
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
100173406
NCBI-ProteinID:
NP_001126423
Ensembl:
ENSPPYG00000015691
UniProt:
Q5R746
LinkDB
All DBs
Position
4:121566645..121649277
Genome browser
AA seq
1430 aa
AA seq
DB search
MSRPSSVSPRQPAPGGGGGGGPSPCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGD
QREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLT
HNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVK
RGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIP
CRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTL
MAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYF
GSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQQEEKQQTTLTEWYSAQEN
SFKPGSQRQRTVLNVTDEYDLLDDGGDAVFSQLTEKDVNCLEPWLVKEMDACLSDIWLHK
DIDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFASQVEQLISMGANVHSKASNG
WMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFD
DEKVDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFM
LHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFV
TMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHT
KLLAPVNCPVADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPH
LGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGAFSDHMAL
LRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRD
VNTNSENWAVVKAALVAGMYPNLVHVDRENLVLTGPKEKKVRFHPASVLSQPQYKKIPPA
NGQAAAIKALPTDWLIYDEMTRAHRIANIRCCSAVTPVTILVFCGPARLASNALQEPSSF
RVDGIPNDSSDSEMEDKTTANLAALKLDEWLHFKLEPEAASLLLQLRQKWHSLFLRRMRA
PSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRK
SSADTEFSDECTTAERVLMKSPSPALHPPQKYKDRGILHPKRGTEDRSDQSSVKSTDSSS
YPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKL
NRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLP
FQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKNTTD
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggcagccggctcctggcggtggcggaggcggc
ggcccctcgccgtgtggtcctgggggcggcggccgggccaagggactgaaggacattcgc
attgatgaggaggtgaagatagcagtcaatatcgcgctggagcgcttccgatacggggac
cagagagaaatggagtttccttcttctttgaccagtactgaaagagcctttattcatcga
ctcagtcagtctcttggtttggtctctaaaagtaaaggaaagggagcaaatagataccta
actgtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgact
cataatacaaaacatgctgttaggagcctaattcagagatttcctgtcaccaataaagag
cgtacagaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaac
cgggaaatgagcaagacaagtgggcgactcaacaatggcatacctcagattccagtgaaa
agaggagaatccgaatttgattcttttaggcagtctttaccagtgtttgagaaacaggaa
gaaattgttaaaataattaaggaaaataaagtagttttgattgtaggagaaactgggtct
ggaaagaccacacagattcctcagttccttttagatgattgctttaaaaatggtatcccc
tgccgtatattttgtactcaaccaagacgattggcagctatcgctgtggctgaaagagtt
gccgcagagagaagggaaaggattggtcaaacaattggttatcagatccgattagaaagc
agggtttctccaaagacacttctgacattttgtactaatggggtattgcttcgtacattg
atggcaggagatagtacgttgtcgactgtgacacatgttatcgtggatgaagtgcatgaa
agggatcgatttagtgatttcttacttacaaagttaagagatttgttgcaaaagcaccca
actttgaaactaattctttctagtgctgccttggatgtaaatctcttcataagatatttt
ggaagttgtccagtgatatatatacagggaagaccatttgaagtaaaagaaatgtttctg
gaagatattttaagaacaactggatatacaaacaaagaaatgttaaaatacaaaaaggaa
aaacagcaagaagagaaacaacaaaccacacttacagaatggtactcagctcaagaaaat
agtttcaagcctggatctcagaggcagagaactgttctaaatgtgactgatgagtatgac
ttactggatgatggtggtgatgctgtcttcagtcagctgactgaaaaagatgtgaattgc
cttgaaccatggttagtaaaggaaatggatgcttgcctttctgatatatggctacataaa
gatattgatgcctttgctcaggtctttcatctcattttaactgaaaatgttagtgttgat
tacagacatagtgaaaccagtgcaacagctctgatggttgctgcaggacgtggctttgca
agtcaagtagaacagttaatcagtatgggagccaatgtccatagtaaagcatcaaatggc
tggatggcattggattgggctaaacactttgggcagactgaaattgtggatcttctggaa
tcttacagtgcttcactggaatttggaaatctggatgaaagttctctggttcaaacaaat
ggaagtgacctcagtgctgaagacagagagctcctgaaagcttatcatcatagtttcgat
gatgaaaaagtagacttggatttgatcatgcatcttctatacaatatctgccatagttgt
gatgctggtgcagtactaatttttctgcctggatatgacgaaattgttggactgagagat
cgcatcctgtttgatgacaagcggtttgctgacaatacacatagatatcaagtctttatg
cttcattcaaatatgcaaacatccgatcaaaagaaagtattaaaaaacccacctgcaggt
gttcgaaaaataattctttccaccaatattgctgaaaccagcatcacagtcaatgatgtt
gtctttgttattgattctggtaaggtgaaagagaaatcctttgatgctctgaattttgtt
acaatgttaaaaatggtatggatttccaaagctagtgccatacagcggaaaggcagggca
gggcgatgtagacctggaatttgttttcgtctgttcagtagactccgattccagaatatg
ttggaatttcagactccggaacttttgagaatgccattacaggaactttgcttacatacc
aagctgttagccccagttaattgtcccgttgctgattttcttatgaaagctcctgaacct
ccaccagctttaattgtaagaaatgctgtacaaatgcttaagacaatagatgcaatggat
acatgggaagatctgactgaacttgggtatcatttggctgacttgccagtagaaccacat
cttggtaaaatggtcttgtgtgctgttgttttaaagtgtctggaccccatccttacaatt
gcttgcacgctcgcttatcgagatccttttgtactacctactcaggcctctcaaaaacgt
gcagctatgctttgcaggaaacgttttactgcaggagctttcagtgaccatatggcactt
ctcagagcattccaggcctggcaaaaagcacgaagtgatgggtgggagcgagccttttgt
gaaaagaattttctttcacaggctactatggaaataatcataggcatgagaacacagttg
cttggtcaacttagagcatcaggttttgttagagcacgaggtggtggtgacattcgagat
gttaacacaaactctgagaattgggctgtcgttaaagctgcattggtggcaggcatgtat
cctaatttagtccacgtggacagagagaatctagtgttgacagggccaaaggagaaaaaa
gtacgatttcatcctgcttcagttctcagtcagcctcaatataaaaagattcctccagcc
aatggtcaagctgcagcaattaaggcactgcccacagattggcttatttatgatgaaatg
accagagcccatagaatagctaatattagatgttgttcagcagtgacgcctgtcactata
ttggtattctgtggaccagctagattggcaagtaatgctcttcaggaaccttcatccttt
agagtggatggcattcccaatgacagtagtgatagtgaaatggaggacaaaactacagct
aatttggcagccttgaaacttgatgagtggctccatttcaaactggagccagaggcagct
agtttattgctgcagctcagacagaagtggcatagcttatttttacgccgaatgagagct
ccatccaaaccttggtctcaagttgatgaagctaccataagagcaattatagctgtttta
agcactgaagaacagtctgcaggtttacaacaaccatctgggattggccaaaggccaagg
cctatgtcttcagaagagcttcctttggcttcatcttggaggtcaaataatagtaggaaa
agttcagcagatactgaattttctgatgagtgtactactgcagaaagagtactgatgaaa
tctccatctccagcattacacccacctcagaagtacaaagatagaggaattttacatcct
aaacgaggcactgaggaccgatcagatcagtcttcggtgaaatctacagacagcagtagt
tacccaagtccttgtgctagtccttctcctccatcctcaggaaagggctcaaaatctcct
tcaccaagaccaaacatgcctgttcgatacttcataatgaagagtagcaatttgagaaac
cttgaaatttctcaacagaagggtatctggtctacaactcctagtaatgaacggaagcta
aatcgagccttttgggaaagcagcatggtttacttggtattttctgttcaaggatctgga
catttccagggattttctaggatgtcttctgagattggaagggaaaagagtcaggactgg
ggctctgctggactaggaggagtatttaaggtggagtggatacgaaaagaaagccttccc
tttcagtttgcacaccatttactcaatccatggaatgacaacaagaaagtgcagataagc
agggatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaacgt
cttcccttgggagaaaaaaacacaactgattga
DBGET
integrated database retrieval system
