Pongo abelii (Sumatran orangutan): 100173700
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Entry
100173700 CDS
T01416
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100173700 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pon03041
]
100173700 (DHX38)
Enzymes [BR:
pon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100173700 (DHX38)
Spliceosome [BR:
pon03041
]
Complex C
Other components
Step II factors
100173700 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
Flavi_DEAD
Dysbindin
AAA_30
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
100173700
NCBI-ProteinID:
NP_001126700
Ensembl:
ENSPPYG00000007515
UniProt:
Q5R5R8
LinkDB
All DBs
Position
18:complement(71669924..71689182)
Genome browser
AA seq
1227 aa
AA seq
DB search
MEDTSEDASIHRLEGTDLDCQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSKISSYKDWEESKDDQKDAEEEGGDQAGRNIRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERERREHGVYASSKEEKDWKKEKSRDRDYDRKRDRDERDRSRHSS
RSERDGGSERSSRRNEPESPRHRPKDAATPSRSTWEEEDSCSGSSRRSQWESPSPTPSYR
DSERSHRLSTRDRDRSVRSKYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREEG
EEGISFDTEDERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMG
VKKEEEPDKAVTEDGKVDYRTEQKFADHMKRKSEASSEFAKKKSILEQRQYLPIFAVQQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL
QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS
LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI
VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKN
NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ
AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW
LAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVR
SMKIYTPGRREQGEPMTPRRTPARFGL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaccagtgaggatgcctcgatccatcgattggaaggcactgatctggactgt
caggttggtggtcttatttgcaagaccaaaagtgcggccagcgagcagcatgtcttcaag
gctcctgctccccgcccttcattactgggactggacttactggcttccctgaaacggaga
gagcgagaggagaaggacgatggggaggacaagaagaagtccaaaatctcctcctacaag
gactgggaagagagcaaggatgaccagaaggatgctgaggaagagggcggtgaccaggct
ggccgaaatatccggaaagacagacattatcgatctgctcgggtagagactccatcccat
ccaggtggtgtgagcgaagagttttgggaacgcagtcggcagagagagcgggagcggcgg
gaacatggtgtctatgcctcgtccaaagaagaaaaggattggaagaaggagaaatcgcgg
gatcgagactatgaccgcaagagggacagagatgagcgggatagaagtaggcacagcagc
agatcggagcgagatggagggtcagagcgtagcagcagaagaaatgaacccgagagccca
cgacatcgacctaaagatgcagccaccccttcaaggtctacctgggaggaagaggacagt
tgctctggctcctcaaggcgctcacagtgggaatcgccctccccgacgccttcctatcgg
gattctgagcggagccatcggctgtccactcgagatcgagacaggtctgtgaggagcaag
tactcggatgacacgcctctgccaactccctcctacaaatacaacgagtgggccgatgac
agaagacacttggggtccaccccgcgtctgtccaggggccgaggaagacgcgaggagggc
gaagaaggaatttcatttgacacggaggacgagcggcagcagtgggaggatgaccagagg
caagccgatcgggattggtacatgatggacgagggctatgatgagttccacaaccctctg
gcctattcctccgaggactacgtgaggaggcgggagcagcacctgcataaacagaagcag
aagcgcatttcagctcagcggagacagatcaatgaggataacgagcgctgggagacaaac
cgcatgctcaccagtggggtggtccatcggctggaggtggatgaggactttgaagaggac
aacgcagccaaggtgcatctgatggtgcacaatctggtgcctccctttctggatgggcgc
attgtcttcaccaagcagccggagccggtgattccagtgaaggacgccacttctgacctg
gccatcattgctcggaaaggcagccaaacagtgcggaagcatagggagcagaaggagcgc
aagaaggctcagcacaaacactgggaactggctgggaccaaactgggagatataatgggc
gtcaagaaggaggaagagccagataaagctgtgacggaggatgggaaggtggactacagg
acagagcagaagtttgcagatcacatgaagagaaagagcgaagccagcagtgaatttgca
aagaagaagtccatcctggagcagaggcagtacctgcccatcttcgcagtgcagcaggag
ctgctcactattatcagagacaacagcatcgtgatcgtggttggggagacggggagtggt
aagaccactcagctgacacagtacctgcatgaagatggttacacggactatgggatgatt
gggtgtacccagccccggcgtgtagctgccatgtcagtggccaagagagtcagtgaagag
atggggggaaaccttggcgaggaggtgggctatgccatccgctttgaagactgcacttca
gagaacaccttgatcaaatacatgactgacgggatcctgctccgagagtccctccgggaa
gccgacctggatcactacagtgccatcatcatggacgaggcccacgagcgctccctcaac
actgacgtgctcttcgggctgctccgggaggtagtggctcggcgctcagacctgaagctc
attgtcacatcagccacgatggatgcggagaagtttgctgccttttttgggaatgtcccc
atcttccacatccctggccgtaccttccctgttgatatcctcttcagcaagaccccacag
gaggattacgtggaggctgcagtgaagcagtccttgcaggtgcacctgtcgggggcccct
ggagacatccttatcttcatgcctggccaagaggacattgaggtgacctcagaccagatt
gtggagcatctggaggaactggagaacgcacctgccctggctgtgctgcccatctactct
cagctgccttctgacctccaggccaaaatcttccagaaggctccagatggtgttcggaag
tgcatcgttgccaccaatattgccgagacgtctctgactgttgacggcatcatgtttgtt
atcgattctggttattgcaaattaaaggtcttcaaccccaggattggcatggatgctctg
cagatctatcccattagccaggccaatgccaaccagcggtcagggcgagccggcaggacg
ggcccaggtcagtgtttcaggctctacacccagagtgcctacaagaatgagctcctgacc
accacggtgcccgagatccagaggaccaacctggccaacgtggtgctgctgctcaagtcc
ctcggggtgcaggacctgctgcagttccacttcatggacccgcccccggaggacaacatg
ctcaactctatgtatcagctctggatcctcggggcgctggacaacacaggtggtctgacc
tctactgggcggctgatggtggagttcccgctggaccctgccctgtccaagatgctcatc
gtgtcctgtgacatgggctgcagctctgagatcctgctcattgtctccatgctctcggtc
cctgccatcttctacaggcccaagggtcgagaggaggagagtgatcaaatccgggagaag
ttcgctgttcctgagagcgatcatttgacctacctgaatgtctacctgcagtggaagaac
aataattactccaccatctggtgtaacgatcatttcatccatgctaaggccatgcggaag
gtccgggaggtgcgagctcaactcaaggacatcatggtgcagcagcggatgagcctggcc
tcgtgtggcactgactgggacatcgtcaggaagtgcatctgtgctgcctatttccaccaa
gcagccaagctcaagggaatcggggagtacgtgaacatccgcactgggatgccctgccac
ttgcaccccaccagctccctttttggaatgggctacaccccagattacatagtgtatcac
gagttggtcatgaccaccaaggagtacatgcagtgcgtgaccgctgtggacggggagtgg
ctggcggagctgggccccatgttctatagcgtgaaacaggcgggcaagtcacggcaggag
aaccgtcgtcgggccaaagaggaagcctctgccatggaggaggagatggcgctggccgag
gagcagctgcgagcccggcggcaggagcaggagaagcgcagccccctgggcagtgtcagg
tctatgaagatctacactccaggccggagagagcaaggggagcccatgacccctcgccgc
acgccagcccgctttggtctgtga
DBGET
integrated database retrieval system
