Pongo abelii (Sumatran orangutan): 100173960
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Entry
100173960 CDS
T01416
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon03008
Ribosome biogenesis in eukaryotes
pon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100173960 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
100173960 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pon03021
]
100173960 (XRN2)
03019 Messenger RNA biogenesis [BR:
pon03019
]
100173960 (XRN2)
03009 Ribosome biogenesis [BR:
pon03009
]
100173960 (XRN2)
03016 Transfer RNA biogenesis [BR:
pon03016
]
100173960 (XRN2)
Transcription machinery [BR:
pon03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100173960 (XRN2)
Messenger RNA biogenesis [BR:
pon03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
100173960 (XRN2)
Ribosome biogenesis [BR:
pon03009
]
Eukaryotic type
Pre-60S particles
RNases
100173960 (XRN2)
Transfer RNA biogenesis [BR:
pon03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100173960 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
100173960
NCBI-ProteinID:
NP_001126942
Ensembl:
ENSPPYG00000010755
UniProt:
Q5R4L5
LinkDB
All DBs
Position
21:16032302..16118110
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLLREKKVKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSISPNTSF
TSDGSPSPIGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDADAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYQTGSTEPVDVPPELCHGIQG
KFSLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAV
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGIYSNAAPPPAT
YQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVGAEPLLPWNRMLQTQ
NAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLSPPSGRYNWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttcttccgctggctcagccgcaagtacccgtccatcatagtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattccagttgatgccagtaaa
cctaatccaaatgatgtggagtttgataatctgtatttggatatgaatggaatcatccat
ccctgtactcatcctgaagacaaaccagcaccaaaaaatgaagatgaaatgatggttgca
atttttgagtacattgacagacttttcagtattgtaagaccaagacgacttctctacatg
gcaatagatggagtggcaccacgtgctaaaatgaaccagcagcgttcaaggaggttcagg
gcatcaaaagaaggaatggaagcagcagtcgagaagcagcgagtcagggaagaaatattg
gcaaaaggtggctttcttcctccagaagaaataaaagaaagatttgacagcaactgtatt
acaccaggaactgaattcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgctagtgca
cctggtgaaggagaacataaaatcatggattacattagaaggcaaagagcccagcctaac
catgacccaaatactcatcattgtttatgtggagcagatgctgatctcattatgcttggc
cttgccacacatgaacccaactttaccattattagagaagaattcaaaccaaacaagccc
aaaccatgtggtctttgtaatcagtttgggcatgaggtcaaagattgtgaaggtttgcta
agagaaaagaaggtaaagcatgatgaacttgccgatagtcttccttgtgcagaaggagag
tttatcttccttcggcttaatgttcttcgtgagtatttggaaagagaactcacaatggcc
agcctaccattcacatttgatgttgagaggagcattgatgactgggttttcatgtgcttc
tttgtgggaaatgacttcctccctcatttgccgtcgttagagattagggaaaatgcaatt
gaccgtttggttaacatatacaaaaatgtggtacacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagagaatgaagagagatcaaccagccttcactcctagtggaatattaactcct
catgccttgggttcaagaaattcaccaggttctcaagtagccagtaatccgagacaagca
gcctatgaaatgaggatgcagaataactctagtccttcgatatctcctaatacgagtttc
acatctgatggctccccgtctccaataggaggaattaagcgaaaagcagaagacagtgac
agtgaacctgagccagaggataatgtcaggttatgggaagctggctggaagcagcggtac
tacaagaacaaatttgatgcggatgcagctgatgagaaattccgtcggaaagttgtgcag
tcgtacgttgaaggactttgctgggttcttagatattattaccagggctgtgcttcctgg
aagtggtattacccatttcattatgcaccatttgcttcagactttgaaggcattgcagac
atgccatctgattttgagaagggtacgaaaccgtttaaaccactagaacaacttatggga
gtatttccagctgcaagtggtaattttctacctccatcatggcggaagctcatgagtgat
cctgattctagtataattgatttctatcctgaagattttgctattgatttgaatgggaag
aaatatgcatggcaaggtgttgctctcttgccattcgtggatgagcgaaggctacgagct
gccctagaagaggtatacccagacctcactccagaagagaccagaagaaacagccttgga
ggtgatgtcttatttgtggggaaacatcacccactccatgacttcattttagagctgtac
cagacaggttccacagagccagtggatgtaccccctgaactatgtcatgggattcaggga
aagttttctttggatgaagaagccattcttccagatcaaatagtatgttctcctgttcct
atgttaagggatctgacacagaacactgtagtcagtattaattttaaagacccacagttt
gctgaagattacatttttaaagctgtaatgcttccaggagcaagaaagccagcagcagta
ctgaaacctagtgactgggaaaaatccagcaatggacggcagtggaagcctcagcttggc
tttaaccgtgaccggaggcctgtgcacctggatcaggcagccttcaggactttgggccat
gttatgccaagaggctcaggaactggcatttacagcaatgctgcaccaccacctgcgact
taccagggaaacttatacaggccgcttttgagaggacaagctcagattccgaaacttatg
tcaaatatgaggccccaggattcctggcgaggtcctcctccccttttccagcagcaaagg
tttgacagaggcgttggggctgaacctctgctcccatggaaccggatgctgcaaacccag
aatgcagccttccagccaaaccagtaccagatgctagctgggcctggtgggtatccaccc
agacgagatgatcgtggagggagacagggatatcccagagaaggaaggaaataccctttg
tcaccaccctcaggaagatacaattggaattaa
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