KEGG   Pongo abelii (Sumatran orangutan): 100439809
Entry
100439809         CDS       T01416                                 
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X2
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
pon  Pongo abelii (Sumatran orangutan)
Pathway
pon03018  RNA degradation
pon03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pon00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100439809 (LSM4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100439809 (LSM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pon03019]
    100439809 (LSM4)
   03041 Spliceosome [BR:pon03041]
    100439809 (LSM4)
Messenger RNA biogenesis [BR:pon03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100439809 (LSM4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100439809 (LSM4)
Spliceosome [BR:pon03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100439809 (LSM4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 100439809
NCBI-ProteinID: XP_002828970
Ensembl: ENSPPYG00000009736
UniProt: A0A6D2YBD3
LinkDB
Position
20:complement(18532213..18548347)
AA seq 139 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
PGTGRGQPEKKPGRQAGKQ
NT seq 420 nt   +upstreamnt  +downstreamnt
atgcttcccttgtcactgctgaagacggctcagaatcaccccatgttggtggagctgaaa
aatggggagacgtacaatggacacctggtgagctgcgacaactggatgaacattaacctg
cgagaagtcatctgcacgtccagggatggggacaagttctggcggatgcccgagtgctac
atccgcggcagcaccatcaagtacctgcgcattcccgacgagatcatcgacatggtcaag
gaggaggtggtggccaagggccgcggccgcgggggcctgcagcagcagaagcagcagaaa
ggccgcggcatgggcggcgctggccgaggtgtgtttggtggccggggccgaggtgggatc
ccgggcacaggcagaggccagccagagaagaagcctggcagacaggcgggcaaacagtga

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