Pongo abelii (Sumatran orangutan): 100441453
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Entry
100441453 CDS
T01416
Symbol
FOCAD
Name
(RefSeq) focadhesin isoform X4
KO
K27498
focadhesin
Organism
pon
Pongo abelii (Sumatran orangutan)
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pon03019
]
100441453 (FOCAD)
Messenger RNA biogenesis [BR:
pon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100441453 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
100441453
NCBI-ProteinID:
XP_009242667
Ensembl:
ENSPPYG00000019187
LinkDB
All DBs
Position
13:complement(37161621..37481160)
Genome browser
AA seq
1801 aa
AA seq
DB search
MSDDIRKRFEFPNSLIQSQAAGHLIAAVLKENGFSEKIYQSTNQTPALNLLWEKCCSDNV
VVRTACCEGLVALVAQDHAEFSYVLNGILNLIPSTRNTHGLIKAIMKLLQMQALKEGQGG
EKNIQRVYTIRNHPHPLITVLEHRPDCWPVFLQQLTAFFQQCPERSEVSCIQIMAPFLWY
LYCEPSQLQEYAKLRLALLKVLLQPQVLCDKDQPSILQQQILQLCCDIVPCLQIKDLIQT
TEAMMFIEEIYLSLLRHPVFWKIQLTQMTLQLLCVGEVSLKITGECSSSIHLLEHSVELL
KEDFPVELVIIGIALLLLQTPASQQKPILNLALKLFSVTEDQKIPKSSLLLVMPILQILS
STALEDCISVDEEGPSRQQLALNLLEMIQQECYRDDHQKLSYKLVCPVTSMYGSVFTAWR
ILEVMTDSSAASDWLASVESLLPITTVIPVPAFLLLAHLLVEDKGQNLHQILKVTTELAQ
ADSSQVPNLIPVLMFKLGRPLEPILYNDILYTLPKLGVHKVCIGQILRVIQLLGTTPRLR
AVTLRLLTSLWEKQDRVYPELQRFMAVSDVPSLSVGKEVQWEKLIAKAASIRDICKQRPY
QHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTR
PLILKTLSELFSLVPSLTVNTTEYENFKVQVLSFLWTHTQNKDPIVANAAYRSLANFSAG
EHTILHLPEKIRPEIPIPEELDDDEDDEDVDLSVPGSCYLKLLSLTPPLVLPALEEFFTS
LVKQEMVNMPRGIYHSALKGGVRSDQGKTVAGIPNFILKMYETNKQPGLKPGLAGGMLFC
YDVSMYQSKDGKPLNRLMASRGRSFKQTSLALVHEVHIQLSEWHRAIFLPQAWLAYMNRA
YHAILQGRLGELELQLKHGKEEPEEVQYKKSTAWLWVRDMLTDEITKAAAKESPVVKGNA
LLALSSLAVVVSRHEASLSSDSDGLLEVQPNFLSMKEWVSMILDTLLVIVDSHYQPRGQL
LSWFYYKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSAD
ESQAVQIHMGLALGMFLSRLCEEKLSDICGQEMNLLLMKSLDALENCCFDTSLEYNTGCI
LGVGLVLSLMSHSSQMQSCVHVTALLRKLSAYLDDSGSQSRTFQEVLAYTLSCVCTSAFS
AGIIEATEAEDVMNKLRLLVENSQQTSGFALALGNVVHGLSVCGHGKAEDLGSKLLPAWI
RIVLTEGTPTMLCLAALHGMVALVGSEGDVMQLKSEAIQTSHFQGRLNEVIRTLTQVISV
SGVIGLQSNAVWLLGHLHLSTLSSSQSRASVPTDYSYLPESSFIGAAIGFFITGGKKGPE
SVPPSLLKVVMKPIATVGESYQYPPVNWAALLSPLMRLNFGEEIQQLCLEIMVTQAQSSQ
NAAALLGLWVTPPLIHSLSLNTKRYLLISAPLWIKHISDEQILGFVENLMVAVFKAASPL
GNPELCPSALQGLSQAMKLPSPAHHLWSLLSEATGKIFDLLPNKIRRKDLELYISIAKCL
LEMTDDDANRIAQVTKSNIEKAAFVKLYLVSQGRFPLVNLTDMLSVAVQHREKEVLAWMI
LHSLYQARIVSHANTGVLKRMEWLLELMGYIRNVAYQSTSFQNTALDEALDFFLLIFATA
VVAWADHTAPLLLGLSASWLPWHQENGPAGPVPSFLGRSPMHRVTVQEVLTLLPNSMALL
LQKEPWKEETQKFIDWLFSIMESPKEALSAKSRDLLKATLLSLRVLPEFKKKAVWTRAYG
W
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgatatcaggaaaaggtttgaatttccaaattctcttatccaatcacaggct
gcgggtcatcttattgctgcagtcctaaaggagaatggtttttcagaaaagatttaccaa
tctacaaatcagactcctgctttgaacttgctgtgggagaagtgttgcagtgacaatgta
gtggttcgaacagcctgctgtgaaggtctggtggcactcgttgctcaggatcatgcagag
ttcagctatgttctcaatgggatactcaacttgattccatcaaccagaaatacacatggc
ttgataaaagccattatgaaattactacaaatgcaagctcttaaggaaggacaaggtggg
gaaaagaatattcagagggtatataccattagaaatcatcctcatcctttgatcactgtg
cttgaacacagacctgattgttggccagtgtttttgcagcagctgacagcatttttccag
cagtgccctgaaaggtcagaagtttcatgcattcaaataatggcaccatttctgtggtat
ctgtattgtgaaccatctcagttacaagaatatgctaaactccgactagccctgctgaaa
gtcttacttcaaccccaggttctttgtgacaaggatcaaccatcaatactgcaacagcag
atacttcaactgtgttgtgacatagttccatgtttgcagataaaagatttgatacagaca
acagaagcgatgatgtttattgaggaaatatatttaagccttttgcgtcatcctgttttc
tggaaaattcagcttacccagatgactcttcagctgctgtgtgtcggtgaagtcagctta
aagataactggtgaatgttcatcttcaattcacctcttagagcacagtgttgaacttctg
aaggaggattttcctgttgaactggtcataattggaatagctttactacttctacagact
ccagcaagtcagcagaagccaatcttaaatctagctttgaagctcttctctgttactgag
gatcagaaaatcccaaagtcctctctgctgctagtgatgccaattctgcagatactgtct
tctactgccttggaagactgtatatctgtggatgaagaaggtccctctaggcagcagttg
gctctaaaccttttggaaatgatacagcaggaatgttacagagatgaccaccaaaagctc
tcctacaagcttgtgtgccctgtaaccagtatgtatggttcagtatttacagcctggagg
attcttgaagtaatgacagactcctctgctgcaagtgactggttggcttcagtagagtca
ttgcttcctattactactgtgatccctgtgcctgcctttcttctgctggctcacctcctt
gttgaagacaaaggacaaaatcttcaccaaatactcaaggtcactacagaattagcccaa
gcagattcctcccaggtgccaaatctgattccagttttgatgttcaaattgggaagacca
ctggaacctatattatataatgatatattgtatactttacctaagcttggtgttcacaag
gtgtgtataggacaaattctacgagtaatacaactgcttggaaccacaccacgactaaga
gctgtcactttgcgcttgctgacatctttgtgggaaaagcaggaccgagtctatcctgaa
ctgcagcgtttcatggctgtgtctgatgtaccttctctttcggtgggcaaggaagtccaa
tgggagaaactgattgcaaaagcagcatcaatcagagatatatgtaagcagaggccatat
caacatggtgcagatatgctggcagctatttctcaggtgttgaatgaatgcaccaagcct
gatcaagctactccagcagccttggtattacaaggtcttcatgcactctgtcaagctgag
gttgtttgcattcgctccacttggaatgctctctctccaaagctgagttgtgacacaaga
cctctcattctgaagacactgagtgaactattttctctagttccttccttaacagtcaat
acaactgaatatgagaattttaaagttcaagtcctcagcttcctctggactcatactcaa
aacaaggacccaattgtggcaaatgctgcatatagatccctggccaattttagtgcagga
gaacacaccattcttcatctgcctgaaaagataagaccagaaattcccattcctgaagag
ttagatgatgatgaagatgatgaggatgtggatctttcagttcctggctcttgctatctc
aaactgttgtcactcactccccctttggttttaccagctttggaggaattttttacatca
cttgtgaagcaagaaatggtgaatatgcctcgtgggatatatcactctgcattaaaagga
ggtgtccgctcagaccaaggaaagactgtagcaggaatccccaattttatattgaaaatg
tatgaaacaaacaagcaaccaggattgaaacctggccttgcaggtggtatgttattttgc
tatgatgtttccatgtatcagagtaaagatggaaaaccattgaatagactgatggccagc
agagggcgaagtttcaagcagacatcacttgctcttgtacatgaggttcatatccagctt
tcagagtggcaccgtgcgatttttcttccacaggcctggcttgcatacatgaatcgagct
tatcatgccattttacagggaagactaggagagctggagttgcagttaaaacatggaaaa
gaagaacctgaggaggtgcagtacaaaaaaagcacagcttggctctgggttagagacatg
ctgactgatgagatcaccaaggcagctgcaaaggagagtccggtagtgaaaggcaatgcg
ctgttagctctaagcagccttgctgtcgtcgtatctagacatgaagccagcctctcctca
gactctgacgggctcctggaggttcaacctaatttcctttcaatgaaagagtgggtttcc
atgatacttgatacactcttggtcattgtggatagccattaccaacccagagggcaactt
ctctcctggttttattataagtcctattctggtgaaaacacagctagtgccattgcccgt
tctgctgccgccacggctttgtctctccttgtgccagttttcattatctcttgcaaagag
aaggttgaggaaatcctgaacatgctgactgccaggttacctgggaaaccaagtgctgat
gagtctcaagccgtgcaaatccacatgggccttgctttagggatgtttctctctcgcttg
tgtgaagagaaactcagtgatatatgtggccaagagatgaaccttcttctgatgaagtcg
ttggatgccctggaaaattgctgctttgacactagtcttgaatacaacacgggctgtata
ttgggagttggacttgttctgtccctcatgagtcacagcagccaaatgcagtcctgcgtt
cacgtgacagcattgcttcggaagctgtctgcatacctagatgacagtgggagccagagc
agaacgtttcaggaggtccttgcctacacacttagctgtgtatgtacatcagcgttcagt
gctggaattattgaggctacagaggctgaggatgttatgaacaagcttcgactgttagtg
gagaatagccagcagacttcaggttttgccctggctttaggaaacgtagttcatggattg
tctgtgtgtggacatggaaaagctgaagacttgggcagcaaactactccctgcctggatc
agaattgttctaacagagggcactcccacaatgctttgtctggcagctcttcatggcatg
gtggccctggtaggctctgaaggggatgtaatgcagctgaaatcagaagccatccagacc
tctcattttcaaggcagacttaatgaagtcattagaaccttaactcaggtcattagtgtc
tctggggtgattggtctccagtcaaatgcagtctggcttcttggacatcttcatctatct
actctatcctcaagtcaaagtagagcctctgttcctactgactatagctatttgcctgaa
agcagttttattggagcagctattggcttcttcattacaggaggaaaaaaaggtcctgaa
tctgtgcctccttcccttcttaaagtagtgatgaaacccatagcaactgttggagaaagc
taccaatatcctcctgtgaactgggctgcacttctctctccacttatgaggctaaatttt
ggtgaagagatccagcaactgtgccttgaaattatggtgacccaggcacagtcatcccag
aatgcagctgcactattgggcttgtgggtgacaccaccactgatccacagtctgagtctg
aataccaagagatatctcctgatatctgcacctctgtggataaaacacatctctgatgaa
cagatcctgggttttgttgaaaatttaatggtggcagtttttaaagcagcttccccactt
ggaaatcctgagctatgcccgagtgctttacagggtctgagccaggccatgaaactgccc
agccctgctcaccacctctggagtctgctctctgaagctactgggaaaatttttgacctc
ctgccaaataagattcggagaaaggatctagagctgtatatcagcatagcaaaatgcctc
ttagaaatgacagatgatgatgccaatcggatcgcccaggttactaagagcaacatagaa
aaggctgcctttgtcaaactgtacttagtctctcaaggacgattccccttggtgaacctg
accgatatgctgagtgttgctgtgcagcaccgtgagaaagaggtgttggcctggatgatt
ctgcacagcttataccaggcacggattgtgagccatgccaacacgggcgttttgaagaga
atggagtggctcttggaactgatgggttatattagaaatgttgcgtaccagtcaacatcc
tttcagaatacggctcttgatgaggctttggacttcttcttgctgatatttgcaaccgca
gtggttgcatgggccgaccacactgcccctctcctccttggtctcagtgccagttggttg
ccatggcatcaggagaatggcccggctgggccagtaccaagcttccttggcaggagtcca
atgcacagggtcactgtgcaggaggttctcactctccttcccaatagcatggctctgctg
ctgcagaaagagccatggaaggaagagacccagaagttcattgactggctattcagcatc
atggaaagccctaaagaagccctctcagcaaagtccagggatcttttgaaagccaccctg
ctgtccttgagagttctcccagagtttaagaagaaagctgtatggaccagagcgtatggt
tggtga
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integrated database retrieval system