Pongo abelii (Sumatran orangutan): 100444058 Help Entry 100444058         CDS       T01416                                  Symbol SPG11 Name (RefSeq) spatacsin isoform X1   KO K19026   spatacsin Organism pon  Pongo abelii (Sumatran orangutan) Pathway pon04142   Lysosome pon05014   Amyotrophic lateral sclerosis pon05022   Pathways of neurodegeneration - multiple diseases Brite KEGG Orthology (KO) [BR:pon00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     100444058 (SPG11)  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     100444058 (SPG11)    05022 Pathways of neurodegeneration - multiple diseases     100444058 (SPG11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pon03400]     100444058 (SPG11) DNA repair and recombination proteins [BR:pon03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      100444058 (SPG11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  100444058 NCBI-ProteinID:  XP_024088122 Ensembl:  ENSPPYG00000006432 LinkDB All DBs Position 16:complement(47480996..47582841) Genome browser AA seq 2443 aa AA seqDB search MAAEEGVASAASAGGSWGVAAMGRVLPMLLVPVPAEVMGQLGSRAQLHTQQEALGSLTAA GSLQVLSLEPGSRGGGRCCLEGPFWHFIWEDSRDSSTPTEKPKLLAVGENYELLIYEFNL KDGRCDATILYSCSGEALQKLIEDQDISISLLSLRILSFHNNTSLLFINKCVILHIIFPE RDAAIRVLNCFTLPLPAQAVDMIIDTQLCRGILFVLSSLGWIYIFDVVDGTYVAHVDLAL HKEDMCNEQRQEPAKISSFTSLKVSQDLDVVVIVSSSNSAVALNLNLYFRQHPGHLLCER ILEDLPIQGPKGIDEDDPVNSAYNMKLTKFSFQIDRSWKAQLSSLNETIKKSKLEVSCCA PWFQDILHLESPKSGNHSTSVQSWAFIPQDIMHGQYNVLQKDHAKTSDPGRSWKIMHISE QEEPIELKCVSVTGFTALFTWEVERMGYTITLWDLETQGMQCFSLGTKCIPVDSSGDQQL CFVLTENGLSLILFGLTQEEFLNRLMIHGSASTVDTLCHLNGWGRCSIPIHALEAGIENR QLDTVNFFLKSKENLFNPSSKSSVSDQFDHLSSHLYLRNVEELIPALDLLCSAIRESYSE PQSKHFSEQLLNLTLSFLNNQIKELFIHTEELDEHLQKGVNILTSYINELRTFMIKFPWK LTDAIDEYDIHENVPKVKESSIWKKLSFEEVIASAILNNKIPEAQTFFRIDSHSAQKLEE LIGIGLNLVFDNLKKNNIKEASELLKNMGFDVKGQLLKICFYTTNKNIRDFLVEILKEKN YFSEKEKRTIDFVHQVEKLYLGHFQENMQIQSFPRYWIKEQDFFKHKSVLDSFLKYDCKD EFNKQDHRIVLNWALWWDQLTQESILLPRISPEEYKSYSPEALWRYLTARHDWLNIILWI GEFQTQHSYASLQQNKWPLLTVDVINQNTSCNNYMRNEILDKLARNGVFLASELEDFECF LLRLSRIGGVIQDTLPVQNYKTKEGWDFHSHFILYCLEHSLQHLLYVYLDCYKLSPENCP FLEKKELHEAHPWFEFLVQCRQVASDLTDPKLIFQASLANAQILIPTNQASVSSMLLEGH TLLALATTMYSPGGVSQVVQNEENENCLKKVDPQLLKMALTPYPKLKTALFPQCTPPSVL PSDITLYHLTQSLSPFDPSRLFGWQSANTLAIGDAWSHLPHFSSPDLVNKYAIVERLNFA YYLHNGRPSFAFGTFLVQELIKSKTPKQLIQQVGNEAFVIGLSSFHIPSIGAACVCFLEL LGLDSLKLRVDMKVANIILSYKCRNEDAQYSFIRESLAEKLSKLADGEKTTTEELLVLLE EGTWNSIQQQEIKRLSSESSSQWALVVQFCRLHNMKLSISYLRECAKANDWLQFIIHSQL HNYHPAEVKSLIQYFSPVVQDHLRLAFENLPSVPTSKMDSDQVCNKSPQELQGSKEEMTD LFEILLQCSEEPDSWHWLLVEAVKQQAPILSVLASCLQGASAISCLCVWIITSVEDSVAT EAMGHIQDSTEDHTWNLEDLSVIWRTLLTRQKSKTLIRGFHLFFKDSPLLLVMEMYELCM FFRNYKEAEAKLLEFQKSLETLNTAATKVHPVIPAMWLEDQVCFLLKLMLQQCKTQYELG KLLQLFVEREHLFSDGPDVKKLCVLCQILKDTSIAINHTIITSYSIENFQHECRSILEKL QTDGQFALARRVAELAELPVDDLVIKEITQEMQTLKHIEQWSLKQARIDFWKKCHENFKK NSISSKAASSFFSTQAHVACEHPTGWSSIEERHLLLTLSGHWLAQEDMVPLDKLEELEKQ IWLCRITQHTLGRNQEETEPKFSRQISTSGELSFDSLASEFSFSKLAALNTSKYLELNSL PSKETCENRLDWKEQESLNFLIGHLLDDGCVHEASRVCRYFHFYNRDVALVLHCRALASG EASMEDLHPEIHALLQSAELLEEEAPDIPLRRVHSTSSLDSQKFVTVPSSDEVVTNLEVL TSKCLHGKNYCRQVLCLYDLAKELGCSYTDVAAQDGEAMLREILASQQPDRCKRAQAFIS TQGLKPDTVAELVAEEVTRELLTSSQGTGHKQMFSPTEESQTFLQLTTLCQDRTLVGMKL LDKISSVPHGELSCTTELLILAHHCFTLTCHMEGIIRVLQAAQMLTDNHLAPSEEYGLVV RLLTGIGRYNEMTYIFDLLHKKHYFEVLMRKKLDPSGTLKTALLDYIKRCRPGDSEKHNM IALCFSMCREIGENHEAAARIQLKLIESQPWEDSLKDGHQLKQLLLKALTLMLDAAESYA KDSCVRQAQHCQRLTKLITLQIHFLNTGQNIMLINLGRHKLMDCILALPRFYQASIVAEA YDFVPDWAEILYQQVILKGDFNYLEEFKQQRLLKSSIFEEISKKYKQHQPTDMAMENLKK LLTYCEDVYLYYKLAYEHKFYEIVNVLLKDPQTGCCLKDMLAG NT seq 7332 nt NT seq  +upstreamnt  +downstreamnt atggctgcagaggagggggtcgcgagtgccgcttccgccggcggtagctggggcgttgcg gccatggggcgggttctaccgatgctgttggtgccggtccccgccgaggtgatggggcag ctcggctcccgggcgcagctgcacacacagcaggaggctctggggagcctgacggctgcg ggcagcctccaagtgctttctttggagcctggcagccggggcgggggtcgctgctgcctg gagggccccttctggcactttatatgggaggattctcgtgacagcagcacaccaactgaa aagcccaaactgctcgctgttggtgaaaattatgaactgcttatctatgaatttaatttg aaagatggaagatgtgatgcaaccattttgtatagctgtagtggggaggcattgcaaaag ctcattgaagatcaagatatcagtatttccttattgtctttgagaatcctgtcatttcac aataacacatcattattgttcatcaacaaatgtgtcatcctacatattatatttcctgaa agagatgctgcaattagagtactcaactgtttcacactacccttgcctgcacaggcagtg gacatgattattgacacgcagctctgcagaggaattctttttgttttgagtagtttaggc tggatctacatttttgatgttgtggatggtacatatgtagctcatgtggatttagcactt cacaaagaagacatgtgtaatgagcagcgacaggagccagccaagatttcttcatttact tcactgaaagtttctcaagaccttgatgttgtagtgattgtcagctcctccaactccgca gttgctcttaacttaaatttgtatttcaggcaacacccaggacacctactgtgtgaaaga atactagaagaccttcctattcaaggacctaagggcatagacgaagatgatcctgttaac tctgcctacaacatgaaactgaccaagttttccttccaaattgataggtcttggaaagcc cagctatcatcattgaatgaaacaataaagaaatccaaactggaggtttcctgttgtgct ccatggttccaggatattttgcatttggagtcacctaaatctggtaaccacagtacaagt gtgcagagctgggctttcattccacaggacataatgcacgggcaatataatgttctacag aaagatcatgccaagaccagtgatccaggaagatcatggaaaataatgcacatcagcgaa caagaggaacccatagagcttaaatgtgtgtctgtgacaggattcactgcactgtttact tgggaagtggaaaggatgggctataccattaccctctgggatttggagacccagggcatg cagtgtttttcccttggcacaaagtgtattcctgtagacagtagtggagaccagcaactg tgctttgttttgacagagaatggactctctctgattttgtttggtttgactcaagaagag tttttaaacaggctcatgatccatggaagtgccagcactgtggacactctttgtcatctc aatggctgggggaggtgctcaattcccatacatgcactagaggccgggatagaaaatcgt cagctggacacagtaaatttctttttgaagagcaaggaaaatctttttaatccatcctca aagtcttctgtatctgatcagtttgatcacttgtcatcccatttatatttaagaaatgtg gaagagctgataccagcattggatttactttgctcagcaattagagaaagttattctgaa ccccaaagcaaacacttttcagaacaattgcttaatcttacactgtctttccttaacaac caaataaaggagctttttattcacactgaagaactagatgaacatctgcaaaaaggagtg aacattttgactagctacattaatgaacttcgaaccttcatgataaagtttccttggaag ctaacagatgctatagatgaatatgatatacatgaaaatgtccccaaagtaaaggagagc agtatatggaagaaactcagctttgaggaagttattgccagtgccattttaaacaacaaa ataccagaggcacagactttcttcaggattgatagtcattctgctcaaaaacttgaggag ctgattggcataggcctaaatttggtctttgacaatttgaaaaagaacaatataaaggaa gcctctgaacttttgaagaatatggggtttgatgtaaaaggccaattgctcaagatatgc ttctatacaactaataaaaatatacgtgactttttggttgaaattttaaaagaaaaaaat tatttttctgaaaaagagaaaagaactatagacttcgtgcatcaagttgagaagctttat ttgggacatttccaagaaaatatgcaaatccagtcatttcccaggtattggataaaggaa caagattttttcaagcacaagtctgttttggactcattcctgaaatatgattgtaaagat gaatttaacaaacaggaccatagaattgtgttaaattgggctctgtggtgggatcaacta acacaagaatccatccttctccccaggataagtccagaagaatacaaatcatattcccct gaagccctctggagatacctcacagctcgccatgattggttaaacattatcttatggatt ggagaatttcaaacccagcatagttatgcttcacttcagcagaacaaatggccccttctg actgttgatgttattaaccagaatacttcctgtaacaactacatgaggaatgaaatttta gataagctggccaggaatggggtttttctggcatctgaactggaagactttgaatgcttc ctcctaagactgagccgtattggaggtgtaatacaggataccctccctgttcaaaactac aagaccaaagaaggttgggatttccattctcatttcattctctattgtttggagcacagt ctgcagcatcttctttatgtctaccttgactgttacaaacttagtcctgaaaattgtccc tttttggaaaaaaaagagttacatgaagcacacccttggtttgaatttttagttcagtgt cgacaagttgccagtgatttaacagatcccaaactgatcttccaggctagccttgcaaat gctcagattttgattcccaccaatcaggccagtgtaagcagtatgctattggaaggacat accctcctggcccttgctactacaatgtattctcctgggggtgtcagtcaggttgttcag aatgaagaaaatgaaaactgtttgaagaaggtggatccccagctgttgaagatggcatta actccttaccccaagctaaaaactgctctcttcccacagtgcactcctcctagtgtcctg ccatctgatattacactctaccaccttactcagtcattatcaccctttgatcctagcaga ctttttggctggcagtctgctaacacactagctataggagatgcatggagtcatctccca catttctctagccctgacctggttaataaatatgctatagtggaacgtctgaattttgct tattatttacataatggacggccatcatttgcatttggtacttttctggtccaggaatta atcaagagcaaaactcccaagcagctgatccagcaagtaggcaatgaagcctttgttata gggctgtcctccttccacataccttcaataggagctgcatgtgtttgtttcttagaattg cttggccttgacagcctcaagctcagagttgatatgaaagtggccaatataattttgagc tacaagtgcagaaatgaagatgctcagtacagctttatcagagagtctctagccgaaaaa ctatctaaactagctgatggtgaaaagaccaccacagaagaattgcttgttctcttagaa gaaggtacatggaacagcattcagcaacaggaaataaagaggttatccagtgaatctagc agccaatgggcattagtggtacagttctgcaggctacacaatatgaaactaagcatatct taccttagagaatgtgccaaagcaaatgattggctgcagttcattattcacagccagctc cacaactaccacccagcagaggtgaaatcccttatccagtacttcagcccagtcgttcaa gaccacttaaggctggcttttgagaacttgccctcagtgcctacctccaaaatggacagc gatcaagtctgcaataagtccccccaggaacttcaaggaagcaaagaagagatgaccgat ttatttgaaattctgctccaatgctcagaggagccagactcctggcactggcttctggtt gaagcagtgaaacaacaggcccctatcctcagtgttctggcctcatgtctccagggtgcc agtgccatttcttgtctctgtgtttggatcatcacttctgtggaggacagtgttgcaact gaagcaatgggacacattcaggactcaacagaggaccatacctggaaccttgaggatctt tcagtcatctggagaacattattaacaagacagaagagcaaaactctcatcagaggtttc caccttttctttaaggattccccgttactactggtgatggagatgtatgaactgtgtatg ttcttcaggaattataaagaagctgaagctaaacttctggagtttcagaagagccttgaa acgcttaacacagcagccacaaaggtccaccctgtcatccctgctatgtggctggaggat caggtgtgtttccttttgaagcttatgctacagcagtgtaagacccagtatgagctgggg aagcttttacagctctttgttgaaagagagcatctcttctctgatggtccagatgttaaa aagctttgcgtcctttgccagattttgaaggatacatccatagccattaatcatacaatt attaccagctacagcattgagaattttcagcatgaatgtagatctattttggaaaaactg cagacagatggacaattcgctttggccaggagggtagcagaattagctgagttacctgtg gacgacttggttattaaagagataacacaggaaatgcagaccctaaaacacattgaacag tggtcactaaaacaagcaagaattgacttctggaaaaaatgccatgagaattttaagaaa aattcaatttcaagcaaagcagcgtcttcctttttctcaacccaggcccatgtggcatgt gagcacccaactggatggagcagcattgaggagcgccatctgctgctcaccttgtcaggg cactggcttgcccaggaggacatggtgcccttggacaagctggaggagctggaaaagcag atctggctctgccgcatcacccagcacactcttggaagaaatcaggaggaaacagagccc aaattttctcgacagatctcaactagtggtgaactttcctttgatagtttagccagtgag ttttccttctccaagttggctgctctgaacacatcaaaatacttagaacttaacagcctt ccatccaaagagacatgtgagaatagactggattggaaagagcaggagtcactaaacttt ttgattgggcacctactggatgatggctgtgtgcacgaagcaagtagagtatgccggtat tttcatttttataatcgagatgtcgccttggtattgcactgcagagcactggcctcaggg gaagctagtatggaggatctgcacccagagatccatgctctcctacaaagtgctgagctg cttgaggaagaagcgcccgacattcccctaaggagagtccacagcacttcaagtctggat agtcagaagtttgtgacagtgccctccagtgatgaagtggtaactaacctggaagtgctg acaagcaaatgcctccatgggaagaactactgtcgacaggtcctctgtctgtatgatctt gccaaggagttgggctgttcctacacagatgttgctgctcaggatggtgaagccatgctc cgggaaatcttggcctctcagcagcctgaccgatgcaaacgagcccaggccttcatcagc acgcagggccttaagccagatactgtggctgaactcgtggcagaagaggtgacacgggag ctgcttacttcatcacagggaacaggacataagcagatgttcagcccaacagaggaaagc cagacatttcttcagctgaccactctgtgtcaagaccgcacattggtaggcatgaagttg ttggataagatttcctccgttccccatggggaattgtcttgcaccacagagctcctgatc ctggcccatcattgcttcaccctgacgtgccacatggagggcatcatccgagtcctacag gccgcccagatgctcacagataaccacctggcccccagtgaggagtatgggctggtggta cggctcctcactggcattggaaggtacaacgagatgacatacatatttgatttgctgcat aaaaagcactactttgaagtgctaatgaggaagaagttggatccgagtggtaccctgaaa acagccctgctggactacatcaaacgctgccgtcctggagacagtgagaagcacaatatg attgccctgtgcttcagcatgtgccgggagattggcgagaaccacgaggcagctgcccgc atccaactgaaattgattgagtctcagccctgggaggacagcctcaaggatgggcaccag ctgaagcaactgctgctgaaggccctgactctgatgttggatgcagcagagagttacgcc aaggactcctgtgtgcgacaggcccagcactgtcagcggctcaccaagttgataactctg cagattcactttctgaatactggccagaacataatgctcatcaacttgggtcgccacaag ctgatggactgtattctggccctacctcggttctaccaggcgtctattgtggctgaggcc tatgattttgttccagattgggctgaaattttataccagcaagtgattcttaaaggagac tttaattacttggaagaatttaagcagcaaaggttattaaagtccagtatatttgaagag atttccaaaaaatataaacaacatcagcctactgacatggccatggaaaacctgaagaaa ttactcacatattgtgaagatgtttacctgtattacaagttggcatacgaacacaagttt tatgaaattgtaaatgtgcttctgaaggaccctcagacaggttgctgtctaaaggacatg ctagcaggttag

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