Pongo abelii (Sumatran orangutan): 100448681
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Entry
100448681 CDS
T01416
Symbol
SCN2A
Name
(RefSeq) sodium channel protein type 2 subunit alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
100448681 (SCN2A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pon04040
]
100448681 (SCN2A)
Ion channels [BR:
pon04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100448681 (SCN2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
IQCJ-SCHIP1
HB_ELP1
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
100448681
NCBI-ProteinID:
XP_024099513
Ensembl:
ENSPPYG00000013383
LinkDB
All DBs
Position
11:67788629..67941368
Genome browser
AA seq
1873 aa
AA seq
DB search
MLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFCLEDFTFLRDPWN
WLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVM
ILTVFCLSVFALIGLQLFMGNLRNKCLQWPPDNSSFEINITSFFNNSLDGNGTTFNRTVS
IFNWDEYIEDKSHFYFLEGQNDALLCGNSSDAGQCPEGYICVKAGRNPNYGYTSFDTFSW
AFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILAVVAMAYEEQN
QATLEEAEQKEAEFQQMLEQLKKQQEEAQAAAAAASAESRDFSGAGGIGVFSESSSVASK
LSSKSEKELKNRRKKKKQKEQSGEEEKNDRVRKSESEDSIRRKGFRFSLEGSRLTYEKRF
SSPHQSLLSIRGSLFSPRRNSRASLFSFRGRAKDIGSENDFADDEHSTFEDNDSRRDSLF
VPHRHGERRHSNVSQASRASRVLPILPMNGKMHSAVDCNGVVSLVGGPSTLTSAGQLLPE
GTTTETEIRKRRSSSYHVSMDLLEDPTSRQRAMSIASILTNTMEELEESRQKCPPCWYKF
ANMCLIWDCCKPWLKVKHLVNLVVMDPFVDLAITICIVLNTLFMAMEHYPMTEQFSSVLS
VGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVSLSLMELGLANVEGLSVLRSF
RLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVC
KISNDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLTVFMMVMVIGNL
VVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVGRMQKGIDFVKRKIREFIQKAFVRK
QKALDEIKPLEDLNNKKDSCISNHTTIEIGKDLNYLKDGNGTTSGIGSSVEKYVVDESDY
MSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDMEESKEKLNATSSSEGSTVDIGAPA
EGEQPEVEPEESLEPEACFTEDCVRKFKCCQISIEEGKGKLWWNLRKTCYKIVEHNWFET
FIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEMLLKWVAYGFQVYFTN
AWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLG
AIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINYTTGEMFDVSVVNNYSECKALIES
NQTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEDNLYMYLY
FVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKP
IPRPANKFQGMVFDFVTKQVFDISIMILICLNMVTMMVETDDQSQEMTNILYWINLVFIV
LFTGECVLKLISLRYYYFTIGWNIFDFVVVILSIVGMFLAELIEKYFVSPTLFRVIRLAR
IGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKREVGID
DMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPEKDHPGSSVKGDCGNPSVG
IFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQF
IEFAKLSDFADALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEM
DALRIQMEERFMASNPSKVSYEPITTTLKRKQEEVSAIIIQRAYRRYLLKQKVKKVSSIY
KKDKGKECDGTPIKEDTLIDKLNENSTPEKTDMTPSTTSPPSYDSVTKPEKEKFEKDKSE
KEDKGKDIRESKK
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atgctcattatgtgcacgattcttaccaactgtgtatttatgaccatgagtaaccctcca
gactggacaaagaatgtcgagtatacctttacaggaatttatacttttgaatcacttatt
aaaatacttgcaaggggcttttgtttagaagatttcacatttttacgggatccatggaat
tggttggatttcacagtcattacttttgcatatgtgacagagtttgtggacctgggcaat
gtctcagcgttgagaacattcagagttctccgagcattgaaaacaatttcagtcattcca
ggcctgaagaccattgtgggagccctgatccagtcagtgaagaagctttctgatgtcatg
atcttgactgtgttctgtctaagcgtgtttgcgctaataggattgcagttgttcatgggc
aacctacgaaataaatgtttgcaatggcctccagataattcttcctttgaaataaatatc
acttccttctttaacaattcattggatgggaatggtactactttcaataggacagtgagc
atatttaactgggatgaatatattgaggataaaagtcacttttattttttagaggggcaa
aatgatgctcttctttgtggcaacagctcagatgcaggccagtgtcctgaaggatacatc
tgtgtgaaggctggtagaaaccccaactatggctacacaagctttgacaccttcagttgg
gcctttttgtccttatttcgtctcatgactcaagacttctgggaaaacctttatcaactg
acactacgtgctgctgggaaaacgtacatgatattttttgtgctggtcattttcttgggc
tcattctatctaataaatttgatcttggctgtggtggccatggcctatgaggaacagaat
caggccacgttggaagaggctgaacagaaggaagctgaatttcagcagatgctcgaacag
ttgaaaaagcaacaagaagaagctcaggcagcagctgcagccgcatctgctgaatcaaga
gacttcagtggtgctggtggaataggagttttttcagagagttcttcagtagcatctaag
ttgagctccaaaagtgaaaaagagctgaaaaacagaagaaagaaaaagaaacagaaagaa
cagtctggagaagaagagaaaaatgacagagtccgaaaatcggaatctgaagacagcata
agaagaaaaggtttccgtttttctttggaaggaagtaggctgacatatgaaaagagattt
tcttctccacaccagtccttactgagcatccgtggctcccttttctctccaagacgcaac
agtagggcgagccttttcagcttcagaggtcgagcaaaggacattggctctgagaatgac
tttgctgatgatgagcacagcacctttgaggacaatgacagccgaagagactctctgttc
gtgccgcacagacatggagaaaggcgccacagcaatgtcagccaggccagccgtgcctcc
agggtgctccccatcctgcccatgaatgggaagatgcatagcgctgtggactgcaatggt
gtggtctccctggtcgggggcccttcgaccctcacatctgctgggcaactcctaccagag
ggcacaactactgaaacagaaataagaaagagacggtccagttcttatcatgtttccatg
gatttactggaagatcctacatcaaggcaaagagcaatgagtatagccagtattttgacc
aacaccatggaagaacttgaagaatccagacagaaatgcccgccatgctggtataaattt
gctaatatgtgtttgatttgggactgttgtaaaccatggttaaaggtgaaacaccttgtc
aacctggttgtaatggacccatttgttgacctggccatcaccatctgcattgtcttaaat
acactcttcatggctatggagcactatcccatgacggagcagttcagcagtgtactgtct
gttggaaacctggtcttcacggggatcttcacagcagaaatgtttctcaagataattgcc
atggatccatattattactttcaagaaggctggaatatttttgatggttttattgtgagc
cttagtttaatggaacttggtttggcaaatgtggaaggattgtcagttctccgatcattc
cggctgctccgagttttcaagttggcaaaatcttggccaactctgaatatgctaattaag
atcattggcaattctgtgggggctctaggaaacctcaccttggtgttggccatcatcgtc
ttcatttttgccgtggtcggcatgcagctctttggtaagagctacaaagaatgtgtctgc
aagatttccaatgattgtgaactcccacgctggcacatgcatgacttcttccactccttc
ctgatcgtgttccgcgtgctgtgtggggagtggatagagaccatgtgggactgtatggag
gtcgctggtcaaaccatgtgccttactgtcttcatgatggtcatggtgattggaaaccta
gtggttctgaacctcttcttggccttgcttttgagttccttcagttctgacaatcttgct
gccactgatgatgataacgaaatgaataatctccagattgctgtgggaaggatgcagaaa
ggaatcgattttgttaaaagaaaaatacgtgaatttattcagaaagcttttgttaggaag
cagaaagctttagatgaaattaaaccgcttgaagatctaaataataaaaaagacagctgt
atttccaaccataccaccatagaaataggcaaagacctcaattatctcaaagacggaaat
ggaactactagtggcataggcagcagtgtagaaaaatatgtcgtggatgaaagtgattac
atgtcatttataaacaaccctagcctcactgtgacagtaccaattgctgttggagaatct
gactttgaaaatttaaatactgaagaattcagcagtgagtcagatatggaggaaagcaaa
gagaagctaaacgcaactagttcatctgaaggcagcacggttgatattggagctcctgct
gagggagaacagcctgaggttgaacctgaggaatcccttgaacctgaagcttgttttaca
gaagactgtgtacggaagttcaagtgttgtcagataagcatagaagaaggcaaagggaaa
ctctggtggaatttgaggaaaacatgctataagatagtggagcacaattggttcgaaacc
ttcattgtcttcatgattctgctgagtagtggggctctggcctttgaagatatatacatt
gagcagcgaaaaaccattaagaccatgttagaatatgctgacaaggttttcacttacata
ttcatcctggaaatgctgctaaagtgggttgcatatggttttcaagtgtattttaccaat
gcctggtgctggctagacttcctgattgttgatgtctcactggttagcttaactgcaaat
gccttgggttactcagaacttggtgccatcaaatccctcagaacactaagagctctgagg
ccactgagagctttgtcccggtttgaaggaatgagggttgttgtcaatgctcttttagga
gccattccatctatcatgaatgtacttctggtttgtctgatcttttggctaatattcagt
atcatgggagtgaatctttttgctggcaagttttaccattgtattaactacaccactgga
gagatgtttgatgtaagcgtggtcaacaactatagtgagtgcaaagctctcattgaaagc
aatcaaactgccaggtggaaaaatgtgaaagtaaactttgataacgtaggacttggatat
ctctctctacttcaagtagccacgtttaagggatggatggatattatgtatgcagctgtt
gactcgcgaaatgtagaattacaacccaagtatgaagacaacctgtacatgtatctttat
ttcgtcatctttattatttttggttcgttctttaccttgaatcttttcattggtgtcatc
atagataacttcaaccaacagaaaaagaagtttggaggtcaagacatttttatgacagaa
gaacagaagaaatactacaatgcaatgaaaaaactgggttcaaagaaaccacaaaaaccc
atacctcgacctgctaacaaatttcaaggaatggtctttgattttgtaaccaaacaagtc
tttgatatcagcatcatgatcctcatctgccttaacatggtcaccatgatggtggaaacc
gatgaccagagtcaagaaatgacaaacattctgtactggattaatctggtgtttattgtt
ctgttcactggagaatgtgtgctgaaactgatctctcttcgttactactatttcactatt
ggatggaatatttttgattttgtggtggtcattctctccattgtaggaatgtttctggct
gaactgatagaaaagtattttgtgtcccctaccctgttccgagtgatccgtcttgccagg
attggccgaatcctacgtctgatcaaaggagcaaaggggatccgcacgctgctctttgct
ttgatgatgtcccttcctgcgttgtttaacattggcctcctgctcttcctagtcatgttc
atctatgccatctttgggatgtccaactttgcctatgttaagagggaagttgggatcgat
gacatgttcaactttgagacctttggcaacagcatgatctgcctgttccaaattacaacc
tctgctggctgggatggattgctagcacctattcttaatagtggacctccagactgtgac
cctgaaaaagatcaccctggaagctcagttaagggagactgtgggaacccatctgttggg
attttcttttttgtcagttatatcatcatatccttcctggttgtggtgaacatgtacatc
gcggtcatcctggagaacttcagtgttgctactgaagaaagtgcagagcccctgagtgag
gatgactttgagatgttctatgaggtttgggagaagtttgatcccgatgcgacccagttt
atagagtttgccaaactctctgattttgcagatgccctggatcctcctcttctcatagca
aaacccaacaaagtccagctcattgccatggatctgcccatggtcagcggtgaccggatc
cactgtcttgacatcttatttgcttttacaaagcgtgttttgggtgagagtggagagatg
gatgcccttcgaatacagatggaagagcgattcatggcatcaaacccctccaaagtctcc
tatgagcccattacgaccacgttgaaacgcaaacaagaggaggtgtctgctattattatc
cagagggcttacagacgctacctcttgaagcaaaaagttaaaaaggtatcaagtatatac
aagaaagacaaaggcaaagaatgtgatggaacacccatcaaagaagatactctcattgat
aaactgaatgagaattcaactccagagaaaaccgatatgacgccttccaccacatctcca
ccctcatatgatagtgtgaccaaaccagaaaaagaaaaatttgaaaaagacaaatcagaa
aaggaagacaaagggaaagatatcagggaaagtaaaaagtaa
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