Pongo abelii (Sumatran orangutan): 100455958
Help
Entry
100455958 CDS
T01416
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X2
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100455958 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pon03400
]
100455958 (LIG3)
Enzymes [BR:
pon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100455958 (LIG3)
DNA repair and recombination proteins [BR:
pon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
100455958 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
100455958
NCBI-ProteinID:
XP_002827302
Ensembl:
ENSPPYG00000008176
UniProt:
H2NTC2
LinkDB
All DBs
Position
19:49003098..49030828
Genome browser
AA seq
1009 aa
AA seq
DB search
MSLAFKILFPQTLRALSRKELCLFRKHHWPDVRQFSQWSETDLLQGHPLFLRRKPVLSFQ
GSHLRSRATCLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGICRIG
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH
IADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFVTSTNPRKFSGFSAKPNNSGEAP
SSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDGFH
GDVYLTVKLLLPGVIKTIYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIKVFFEQ
SKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNAQEVEKEPGQRRALSVQASPMTP
VQPMLAEACKSVEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH
FKDYIPQAFPGGHSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKASDLADMITRVIREGLEGLVLK
DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGS
QKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAA
VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV
VAGDEGSSTTGGSSEENKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMLTAKPS
TMKVGEKPAMKSSPVKVGEKRKAADETLCQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFV
AFDGDLVQEFDMTSATHVLGSRDKNAAAQQVSPEWIWACIRKRRLVAPC
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggctttcaagatcctctttccacaaaccctccgtgcactcagccgaaaagaa
ctgtgcctgttccgaaaacatcactggcctgatgtaagacaattcagccagtggtcagaa
acagatctgcttcagggacatcccctcttcctgagaagaaagcctgttctgtcattccag
ggaagccatctaagatcacgtgccacctgccttgttttcttgccagggttgcatgtggga
ctctgcagtggcccctgtgagatggctgagcaacggttctgtgtggactatgccaagcgt
ggcacagctggctgcaaaaaatgcaaggaaaagattgtgaagggcatatgccgaattggc
aaagtggtgcccaatcccttctcagagtctgggggtgatatgaaagagtggtaccacatt
aaatgcatgtttgagaaactagagcgggcccgggccaccacaaaaaaaatcgaggacctc
acagagctggaaggctgggaagagctggaagataatgagaaggaacagataacccagcac
attgcagatctgtcttctaaggcagcaggtacaccaaagaagaaagctgttgtccaggct
aagttgacaaccactggccaggtgacttctccagtgaaaggcgcctcatttgtcaccagt
accaatccccggaaattttctggcttttcagccaagcccaacaactctggggaagccccc
tcgagccccacccctaagagaagtctgtcttcaagcaaatgtgaccccaggcataaggac
tgtctgctacgggagtttcgaaagttatgcgccatggtggccgataatcctagctacaac
acgaagacccagatcatccaggacttcctgcggaaaggctcagcaggagatggtttccac
ggtgatgtgtacctaacagtgaagctgctgctgccaggagtcattaagactatttacaac
ttgaatgataagcagattgtgaagcttttcagtcgcatttttaactgcaacccagatgat
atggcacgggacctagagcagggtgacgtgtcagagacaatcaaagtcttctttgagcag
agcaagtctttccccccagctgccaagagcctccttaccatccaggaagtggatgagttc
cttctgcggctgtccaagctaaccaaggaggatgagcagcaacaggcactacaggacatt
gcctccaggtgtacagccaatgaccttaaatgcatcatcaggttgatcaaacatgatctg
aagatgaactcaggtgcaaaacatgtgttagacgcccttgaccccaatgcctatgaagcc
ttcaaagcctcacgcaacctgcaggatgtggtggagcgggtccttcacaacgcgcaggag
gtagagaaggagccgggccagagacgagctctgagcgtccaggcctcgccgatgacacct
gtgcagcccatgttggcggaggcctgcaagtccgttgaatatgcaatgaagaaatgtccc
aatggcatgttctctgaaatcaagtacgatggagagcgagtccaggtgcataagaatgga
gaccacttcagctacttcagccgcagtctcaagccggtccttcctcacaaggtggcccac
tttaaggactacattccccaggcttttcctgggggccacagcatgatcttggattctgaa
gtgcttctgattgacaacaagacaggcaaaccactgccctttgggactctgggagtgcac
aagaaagcagccttccaggatgctaatgtctgcctgtttgtttttgattgtatctacttt
aatgatgtcagcttgatggacagacctctgtgtgagcggcggaagtttcttcatgacaac
atggttgaaattccaaaccggatcatgttctcagaaatgaagcgagtcacaaaagcttcg
gacttggctgacatgataacccgggtgatccgggagggattggaggggctggtgctgaag
gatgtgaagggtacatatgagcctgggaagcggcactggctgaaagtgaagaaagactat
ttgaacgagggggccatggccgacacagctgacctggtggtccttggggccttctatggg
caagggagcaaaggcggcatgatgtcaatcttcctcatgggctgctacgaccctggcagc
cagaagtggtgcacagtcaccaagtgtgcaggaggccatgatgatgccacgcttgcccgc
ctgcagaaggaactagacatggtgaagatcagcaaggaccccagcaaaatacccagctgg
ttgaagatcaacaagatctactatcctgacttcatcgtcccagacccaaagaaagctgcc
gtgtgggagatcacaggagctgaattctccaaatcggaggctcatacagctgacgggatc
tccatccgattccctcgctgcacccgaatccgcgatgataaggactggaaatctgccact
aaccttccccaactcaaggagctgtaccagttgtccaaggagaaggcagacttcactgta
gtggctggagatgaggggagctccactacagggggtagcagtgaagagaataagggtccc
tcagggtctgctgtgtcccgcaaggcccccagcaagccctcagccagtaccaagaaagca
gaagggaagctgagtaactccaacagcaaagacggcaacatgctgactgcaaagccttcc
actatgaaggtgggagagaagccggccatgaagtcttctccagtgaaagtaggggagaag
cggaaagctgctgatgagaccctgtgccaaacaaaggtactgctggacatcttcactggg
gtgcggctttacttgccaccctccacaccagacttcagccgtctcagacgctactttgtg
gcattcgacggggacctggtacaggaatttgatatgacttcagccacgcacgtgctgggt
agcagggacaagaacgctgcggcccagcaggtctccccagagtggatttgggcatgtatc
cggaaacggagactggtagctccctgctag
DBGET
integrated database retrieval system
