Pongo abelii (Sumatran orangutan): 100456237
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Entry
100456237 CDS
T01416
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon03022
Basal transcription factors
pon03420
Nucleotide excision repair
pon05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100456237
09124 Replication and repair
03420 Nucleotide excision repair
100456237
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
100456237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pon03021
]
100456237
03400 DNA repair and recombination proteins [BR:
pon03400
]
100456237
Transcription machinery [BR:
pon03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100456237
DNA repair and recombination proteins [BR:
pon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100456237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
ORC3_N
Motif
Other DBs
NCBI-GeneID:
100456237
NCBI-ProteinID:
XP_002815673
Ensembl:
ENSPPYG00000015531
UniProt:
A0A6D2XLR1
LinkDB
All DBs
Position
4:78756892..78789286
Genome browser
AA seq
395 aa
AA seq
DB search
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
SGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS
NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaacctgaaagaactaagcgatgggaaggaggctatgaaagaacatgggag
attcttaaagaagatgaatctggatcacttaaagctacaatagaagacattctattcaag
gcaaagagaaaaagagtatttgagcaccatggacaagttcgacttggaatgatgcgccac
ctttatgtggtagtagatggatcaagaacaatggaagaccaagatttaaagcctaataga
ctgacgtgtactttaaagttgttggaatacttcgtagaggaatattttgatcaaaatcct
attagtcagattggaataattgtaactaaaagtaaaagagctgaaaaattgactgaactc
tcaggaaacccaagaaaacatataacgtctttgaagaaagctgtggatatgacctgccat
ggagagccatctctttataattccctaagcatggctatgcaaactctaaaacacatgcct
ggacatacaagtcgagaagtactaatcatctttagcagccttacaacttgcgatccatct
aatatttatgatctaatcaagaccctaaaggcagctaaaattagagtatctgttattgga
ttgtctgcagaagttcgcgtttgcactgtacttgctcgtgaaactggtggcacataccat
gttattttagatgaaagccattacaaagagttgctcacacatcatgttagtcctcctcct
gctagctcaagttctgaatgctcacttattcgtatgggatttcctcagcacaccattgct
tctttatctgaccaggatgcaaaaccctctttcagcatggcgcatttggatggcaatact
gagccagggcttacattaggaggctatttctgcccacagtgtcgggcaaagtactgtgag
ctacctgttgaatgtaaaatctgtggtcttactttggtttctgctccgcacttggcacgg
tcttaccatcatttgtttcctttggatgcttttcaagaaattcccctagaagaatataat
ggagaaagattttgttatggatgtcagggggaattgaaagaccaacatgtttatgtttgt
gctgtgtgccaaaatgttttctgtgtggactgtgatgtttttgttcatgattctctacac
tgttgccctggctgtattcataagattccagctccttcaggtgtttga
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