Pongo abelii (Sumatran orangutan): 100457565
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Entry
100457565 CDS
T01416
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100457565
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pon04147
]
100457565
00535 Proteoglycans [BR:
pon00535
]
100457565
00536 Glycosaminoglycan binding proteins [BR:
pon00536
]
100457565
Exosome [BR:
pon04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100457565
Proteoglycans [BR:
pon00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100457565
Glycosaminoglycan binding proteins [BR:
pon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100457565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100457565
NCBI-ProteinID:
XP_054398619
Ensembl:
ENSPPYG00000011521
LinkDB
All DBs
Position
22:55801744..55923431
Genome browser
AA seq
1340 aa
AA seq
DB search
MAPRCPWLWPRRRRLLDVLAPLVLLLGVRAASAEPERVSEEVGLLQLLGDPPPQQVTQTD
DPDVGLAYVFGPDANSGQVARYHFPSLFFRDFSLLFHIRPATEGPGVLFAITDSAQAVVL
LGVKLSGVQDGHQDISLLYTEPGAGQTHTAASFRLPAFVGQWTHLALSVEGGYVTLYVDC
EEFQRMLLARSSRGLELEPGAGLFVAQAGGADPDKFQGMIAELKVRGDPQVSPMHCLDEE
GDDSDGASGDFGSGLGDARERLREETGAALKPRLPMPPPVTTPPLAGGSSMEDSRSEEIE
EQTTVASLGAQTLPGSDSVSAWDGSVRTPGGRMREGGLKGQKGEPGVPGPPGRAGPPGSP
CLPGPPGLLCPVSPLGPAGPALQPVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTG
PQGFPGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFSGDL
EALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPP
GPPGREGPPGRTGQKGSLGEAGAPGHKGSKGDPGPAGARGESGLAGSPGPAGPPGPPGPP
GPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADG
APGFPGLPGREGIAGPQGPKGDRGSQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDG
SVLSVPGPEGRPGFAGFPGPAGPKGDLGSKGERGSPGPKGEKGEPGSIFRPDGGALGPVQ
KGAKGEPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPG
PPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFD
FLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSRLPGPPGPPGPPGYPGIPGPKGESI
RGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP
PGTVGASSGQVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVRNGFRKVQLEARTPL
PRGTDNEVAALQPPVVQLHDSNPYPRWEHPHPTARPWRADDILASPPRLPEPQPYPGAPH
HSSYVHLRPARPTSPPAHTHRDFQPVLHLVALNSPLSGSMRGIRGADFQCFQQARAVGLA
GTFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALFSGSEGPLKPGARIFSF
DGKDVLRHPTWPQKSVWHGSDPNGRRLTESYCETWRTEAPSATGQASSLLGGRLLGQNAA
SCHHAYIVLCIENSFMTASK
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgaggtgtccctggctgtggccgcggcggcggcgcctcctggacgtgctcgcg
cccctggtcctactgctcggggtccgcgcggcctccgcggagccagagcgcgtcagcgag
gaggtggggctgctgcagctccttggggaccccccgccccagcaggtcacccagacggat
gaccccgacgtcgggctggcctacgtctttgggccagatgccaacagcggccaagtggcc
cggtaccacttccccagcctcttcttccgcgacttctcgctgctgttccacatccggcca
gccacagagggcccaggggtgctgtttgccatcacggactccgcgcaggccgtggtcttg
ctgggcgtgaagctctctggggtgcaggacgggcaccaggacatctccctgctctacacg
gaaccaggtgcaggccagacccacacagccgccagcttccggctccccgcctttgtcggc
cagtggacacacttagcgctcagcgtggagggtggctatgtgactctctacgtggactgt
gaggagttccagagaatgctgcttgctcggtcctcacggggcctggagctggagcctggt
gccgggctcttcgtggctcaggcgggaggagcggaccctgacaagttccaggggatgatc
gctgagctgaaggtacgcggggacccccaggtgagccccatgcactgcctggacgaggaa
ggcgatgactcagatggggcatccggagactttggcagtgggctcggggacgcccgggag
cgtctcagggaggagacgggcgcggccctaaaacccaggctccccatgccaccccctgtc
accactccacccttggctggaggcagcagcatggaagattccagaagcgaagaaatcgag
gagcagaccacagtggcttcgttaggagctcagacacttcctggctcagattctgtctcc
gcgtgggacgggagtgtccggacccctgggggccgcatgagagagggcggcctgaagggg
cagaaaggggagccaggtgttccaggcccacctggccgggcaggacccccaggatccccg
tgtctgcctggtcccccgggtctcctgtgcccggtgagtcccctgggtcctgcaggccca
gcgttgcaacctgttcccggaccacaaggacccccagggcctccggggagggacggcacc
cctggaagggacggtgagccgggtgaccctggtgaagacggaaagccaggtgataccggg
ccacagggcttccctgggactccaggggacgtaggccccaagggcgacaagggagaccct
ggggttggagagagagggcccccaggaccccaagggcctccggggcccccaggaccctcc
ttcagacacgacaagctgaccttcattgacatggagggatctggcttcagtggcgatctg
gaggccctgcggggtcctcgaggcttccctggaccccccggaccccccggcgtcccaggc
ctgcccggcgagccaggccgctttggagtgaacagctccgacgtcccaggacctgccggc
cttcctggtgtgcctgggcgcgagggtccccccgggtttcccggcctcccgggaccccca
ggccctccgggaagagaggggcccccaggaaggactgggcagaaaggcagcctgggtgaa
gcaggcgccccaggacataagggaagcaagggagaccccggtcctgctggcgctcgtggg
gagagcggcctggcaggatcccctggacccgctggaccaccaggtccccctgggccccct
gggccaccgggaccaggactccccgctggatttgatgacatggaaggctccgggggtccc
ttctggtcaacagcccgaagcgctgatgggccgcagggaccccccggcctgccaggactc
aagggggatcctggcgtgcctgggctgccgggggcgaagggagaagttggagcagacgga
gcccctgggttccccggcctccctggcagagagggcattgctgggccccaggggccaaag
ggagacagaggcagccagggagaaaagggagatccagggaaggacggagttgggcagcca
ggcctccctggcccccccggacccccggggcctgtggtctacgtgtcggaacaggacgga
tccgtcctgagcgtgccgggacctgagggccggccaggtttcgcaggctttcctggacct
gcaggacccaagggcgacctgggctctaagggcgaacgaggctccccgggacccaagggt
gagaagggtgaaccgggcagcatcttcaggcccgacggcggtgccctgggccctgtccag
aaaggagccaagggagagccgggcttccgaggacccccgggtccatacggacggccgggg
tacaagggagagattggctttcctggacggccgggtcgccccgggatgaacggattgaaa
ggagagaaaggggagcccggagatgccagccttggatttggcatgaggggaatgcccggc
cccccagggcctccagggcccccaggccctccagggactcctgtttacgacagcaatgtg
tttgcagagtccagccgccccgggcctccaggattgccagggaatcagggccctccagga
cccaagggcgccaaaggagaagtgggcccccccggaccaccagggcagtttccgtttgac
tttcttcagttggaggctgaaatgaagggggagaagggagaccgaggtgacgcaggacag
aaaggcgaaaggggtgagcccgggggcggcggtttcttcggctccaggctgccaggcccc
cccggccccccaggcccacctggctaccctgggattccaggtcccaagggagagagcatc
cggggccagcccggcccacctggacctcagggaccccccggcatcggctacgaggggcgc
cagggccctcctggccccccaggcccccccggccccccagggcccccttcatttcccggc
cctcacaggcagactatcagcgttcccggccctccgggcccccctgggccccctgggccc
cctggaaccgtgggcgcctcctcagggcaggtgaggctctgggctacgcgccaggccatg
ctgggccaggtgcacgaggttcccgagggctggctcatcttcgtggccgagcaggaggag
ctctacgtccgcgtgcggaacgggttccggaaggtccagctggaggcccggacgccactc
ccacgagggacggacaacgaagtggccgccttgcagccccccgtggtgcagctgcacgac
agcaacccctacccacggtgggagcacccccaccccaccgcgcggccctggcgggcagac
gacatcctggccagcccccctcgcctgcccgagccccagccctaccccggagccccgcac
cacagctcctacgtgcacctgcggccggcgcgacccacaagcccacccgcccacacccac
cgcgacttccagcccgtgctccacctggttgcgctcaacagcccattgtcaggcagcatg
cggggcatccgcggggccgacttccagtgcttccagcaggcgcgggccgtggggctggcg
ggcaccttccgcgccttcctgtcctcgcggctacaggacctgtacagcatcgtgcgccgc
gccgaccgcgcagccgtgcccatcgtcaacctcaaggatgagctgctgtttcccagctgg
gaggctctgttctcaggctctgagggtccgctgaagcccggggcacgcatcttctccttt
gacggcaaggacgtcctgaggcaccccacctggccccagaagagtgtgtggcatggctcg
gaccccaacgggcgcaggctgaccgagagctactgtgagacgtggcggacagaggctccc
tcggccacaggccaggcctcctcgctgctggggggcaggctcttggggcagaatgccgca
agctgccatcacgcctacatcgtgctctgcatcgagaacagcttcatgactgcctccaag
tag
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