Pongo abelii (Sumatran orangutan): 100458326
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Entry
100458326 CDS
T01416
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
pon
Pongo abelii (Sumatran orangutan)
Pathway
pon04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pon00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100458326 (COL13A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pon00536
]
100458326 (COL13A1)
Glycosaminoglycan binding proteins [BR:
pon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100458326 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
100458326
NCBI-ProteinID:
XP_063583430
Ensembl:
ENSPPYG00000002378
LinkDB
All DBs
Position
8:complement(74049243..74205398)
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AA seq
728 aa
AA seq
DB search
MVAERTHKAATTGARGPEELGAPETVALAAARAERGARLPSPGSCGLLALTLCSLALSLL
AHFRTAELQARVLRLEAERGEQQMETAILGRVNQLLDEKWKLHSRRRREAPKTSPGCNCP
PGPPGPTGRPGLPGDKGAIGMPGRVGVKGQPGEKGSPGDAGLSIIGPRGPPGQPGTRGFP
GFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAP
PPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGI
HGYHGRKGERGMPGMPGKHGAKGAPGISVAGMKGEPGIPGTKGDPGAEGKPGPPGLLGKR
GQRGEKGPEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGVDGQVG
PPGQQGDKGEPGAAGEQGPAGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLP
GQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGMKGEN
GHPGSPGEKGEKGETGQAGSPGEKGEAGEKGDPGAEVPGLPGPEGPPGPPGLQGVPGPKG
EAGLDGAKGEKGVQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKGERGSKG
DPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGL
PVQGCWNK
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggtagcggagcgcacccacaaagcggcaaccaccggtgcccgcggccctgaggagttg
ggcgcgcccgagacggtggctctggcggcggcgcgggcggagcgcggcgcacggctgccg
agtccagggtcgtgcggactgctggcgctgaccctctgctcgctggcactcagcctgctc
gcccactttcggacggccgagctgcaggcccgggtgctgcgcctggaagcggagcgcggg
gagcagcaaatggagacggctattttgggacgagtcaatcaactgctggacgagaaatgg
aagctccactcaaggaggcgccgggaggccccaaagacatctccaggatgtaactgccca
ccaggacctcctggtcccactggaagacccggactcccaggggacaaaggtgccattggg
atgcctggacgtgtgggagtaaagggccaaccaggcgagaaggggtcccctggagacgct
gggctgtccatcattggtccccgcggcccccctggtcaaccaggcactagaggtttccct
ggatttccaggtcccattgggctggatggcaaaccgggccacccaggaccaaagggcgac
atgggtctgacgggtcccccaggacagccgggaccccagggacaaaaaggagaaaagggt
cagtgtggagagtacccacaccggctgctgcctctcctcaattcagtgcgactggctcca
cccccggtcataaaaaggcggacattccagggtgaacagagccaggccagcatccaaggc
ccaccagggcccccaggcccccctggaccaagtggacctctggggcacccaggactgcca
gggcccatggggccacctggcttacctgggcctcctggaccaaagggagacccagggatc
cacggctaccatggccggaagggagaacggggcatgccagggatgccaggcaagcatgga
gccaagggggctcccggaatttccgtggctgggatgaagggtgagccagggatcccagga
accaagggagacccaggagcagaagggaagccggggcccccaggtttgctgggaaagagg
gggcagaggggtgagaaggggcctgaaggctcccctgggcttcctggcctcctgggacag
aagggagagaaaggtgatgctggcaactccattggaggaggcagaggggaacctggccct
ccagggctccctgggcccccagggccaaagggagaagcaggtgtcgatggccaggttggc
cccccagggcagcaaggagacaagggggagcctggagcagctggagaacagggaccagct
ggccccaagggctccaagggagaaccagggaaaggagagatggtggattacaatggaaac
atcaatgaggctctccaggagatccggacgctggccttgatggggcctcctggtcttcct
gggcaaattggcccacctggagctccagggattccaggccagaagggggagattggactg
ccaggccctccaggacatgatggggaaaagggacctcgcggtaaaccaggagacatgggc
cctcctggtcctcaaggccccccaggaaaggatggacctccaggaatgaagggagaaaac
gggcacccagggagcccaggagagaagggggagaaaggggaaacaggacaagcaggctca
ccgggagagaaaggagaagccggggagaagggcgatccaggagcagaggttcctgggctg
ccagggccagaggggcctcccggacctccggggctccaaggtgttcctggaccaaagggg
gaagcaggactagatggagcaaaaggagagaaaggcgtccagggagaaaaaggagaccgt
ggtcccctgggactacctggagcttcaggtttggacggcaggcctgggccaccgggtact
ccaggaccaattggagttccaggcccagcgggaccaaagggagagaggggcagcaaagga
gaccctgggatgacaggaccaacgggagcagctgggcttcctggtttacatggaccaccc
ggggacaagggaaaccggggggagagggggaagaaaggctctagagggcctaaaggggat
aagggagaccaaggagcgcctggattagatgccccctgcccattgggcgaagatggctta
ccagtccaaggctgctggaacaagtga
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